Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  407 bits (1047), Expect = e-117
 Identities = 274/805 (34%), Positives = 424/805 (52%), Gaps = 42/805 (5%)

Query: 438  HWLSQML----DDLSVAIQ---LSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSA 490
            +W+S  +    DDL V  Q   +  +   ++LAE ++ EQ   ++++LD  P P+Y    
Sbjct: 237  YWVSATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDT 296

Query: 491  DGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLV 550
             G++   N  F D  G+  +  I +  +++ P E+AE+  A  + +  +   Q+YE+ L+
Sbjct: 297  QGRYQGFNKAFADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGRQSYEIELI 356

Query: 551  DYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610
               G + + L  +A+ +     V G+VG ++D++ERK  E E+ +AKEAA+  ++AK DF
Sbjct: 357  TPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDF 416

Query: 611  LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEA 670
            LANMSHEIRTPMN ++GM  LAL+T L   QR Y+  +  SA  LL II+DILDFSK+EA
Sbjct: 417  LANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEA 476

Query: 671  GKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNL 730
            G+L+VE I F+L+ V  +    V+++A +KG+E L    P +P  L+GDP RL Q+++NL
Sbjct: 477  GRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNL 536

Query: 731  CGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSIT 790
             GNA+KFT +GEI ++  +++       L F V DTGIGIA +K + +F+AF+Q D+S T
Sbjct: 537  LGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTT 596

Query: 791  RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLA 850
            R++GGTGLGL+I  +L ELMGG+I V S  G+GS F F++      A   +  + + G  
Sbjct: 597  RRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPERRLSG-- 654

Query: 851  DKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNG 910
               +L+V  N   R  L  LL +    VV  ++G E L+ ++Q  +D +  D      + 
Sbjct: 655  KPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQGQWDGVVADSRPVDGDA 714

Query: 911  IELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYG 970
             +LL  +     R  +   L  +  R+  +    +  V   + KP     L  ++     
Sbjct: 715  GDLLEHLARSPGRVPLLMLLSPSRMRQ-EIARCKALGVGHYLGKPALADELWRSLQALLE 773

Query: 971  IEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALER 1030
                      A     P  AG  +LL ED+ VNQ++   +L+  G  V +A HG EA+  
Sbjct: 774  PAVAGVPATVAEAAGTPP-AGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAA 832

Query: 1031 LEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLP---IVAMTANAMAIDIERCLQAG 1087
                 FDLVLMDMQMP M G  AT  IRA+ +   L    I A++A A   D +R L AG
Sbjct: 833  AARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAG 892

Query: 1088 MNDHLSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLE 1147
            M+ +L KP++     +VL    +   E+    +      A +       D+ Q+ G D+ 
Sbjct: 893  MDGYLLKPLQQKDLQEVLAGLARPGQEEGGFDYGRMLEGADR-------DVLQIIG-DVF 944

Query: 1148 QAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLE 1207
              + R+                    E+ ++   + A DW    RVAH+L+G+AAN G  
Sbjct: 945  PGLARL--------------------EMAAMEEALAAADWERLGRVAHSLRGAAANFGPS 984

Query: 1208 ALAQLAAEMEQSLEQQVLPSFELLQ 1232
             L Q A E+E+    Q +    L +
Sbjct: 985  PLVQQATEVERLAPHQAVQPAHLAE 1009