Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 940 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  246 bits (629), Expect = 5e-69
 Identities = 168/546 (30%), Positives = 274/546 (50%), Gaps = 40/546 (7%)

Query: 445 DDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDL 504
           D L+    ++++ + +R+A +         + I+ ++ + +   + DG   + N    +L
Sbjct: 394 DFLACFYDVTESRQAERIARQY--------EAIVRSSDDAILSKTLDGIVTSWNRGAEEL 445

Query: 505 MGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEA 564
            G    E++ +    +FP E         + L + ++ ++++   +   G   ++ V  +
Sbjct: 446 FGYSAAEMVGRSTLHLFPPECLAEERDILERLRRGETVKHFDTRRIRKDGRIVDVSVTIS 505

Query: 565 SFSDRADKVNGIVGILLDMTERKEMEDELRK------------------AKEAADAMSQA 606
              D   +V GI  I  D+T RK  E EL++                   K+AA++ + A
Sbjct: 506 PLLDGEGRVLGISKIARDITARKAAEAELQRHRQRLEELVQERTRQLEELKDAAESANVA 565

Query: 607 KGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFS 666
           K  FLANMSHEIRTP+NA+ G+ HL     L   Q +++ ++  +A++LLG+IN ILD S
Sbjct: 566 KSAFLANMSHEIRTPLNAMTGLTHLIRRAGLKPQQAEHMDKLEAAAQHLLGVINAILDLS 625

Query: 667 KMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQV 726
           K+EAGK  +E     ++ +L NV + +  + Q KG+    +  P +P  L+GDP RL Q 
Sbjct: 626 KIEAGKFALEEAPVRVESLLGNVASFLQERVQAKGLVLRTEAQP-LPPHLLGDPTRLQQA 684

Query: 727 MVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQAD 786
           ++N  GNA+KFT QG I L     +  E    LRF V+DTGIGI  + +  LF AF QAD
Sbjct: 685 LLNYAGNALKFTEQGSITLRVHTLEEGEADALLRFEVQDTGIGIPPEAMHKLFSAFEQAD 744

Query: 787 NSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMR-DISQP 845
           NS TR+YGGTGLGL+I+++L +LMGG+    SE G+GSTF F+    L+  K R     P
Sbjct: 745 NSTTRRYGGTGLGLAITRKLAQLMGGEAGASSEPGRGSTFWFT--ARLKKGKERYGNGAP 802

Query: 846 VHG----------LADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKP 895
           + G           A + VL+ +D    + I   +L  +   V    +G  A+   +   
Sbjct: 803 LAGGNAEQRLRQEFAGRTVLLAEDEPINQEITKFMLEDVGLRVELAPDGKVAVERARGND 862

Query: 896 FDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKP 955
           + ++ +D  MP M+G++    ++ L          +TA     +        ++  I KP
Sbjct: 863 YALILMDMQMPLMDGLDATREIRQLQRHRQTPILAMTANAFAEDKARCLGAGMNDFIAKP 922

Query: 956 VNPSNL 961
           VNP  L
Sbjct: 923 VNPDVL 928



 Score =  122 bits (306), Expect = 2e-31
 Identities = 63/129 (48%), Positives = 82/129 (63%)

Query: 981  AHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVL 1040
            A    R  FAG+++LL ED  +NQE+   +L+D GL V +A  G+ A+ER    D+ L+L
Sbjct: 808  AEQRLRQEFAGRTVLLAEDEPINQEITKFMLEDVGLRVELAPDGKVAVERARGNDYALIL 867

Query: 1041 MDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDK 1100
            MDMQMP+MDG+ AT  IR   R    PI+AMTANA A D  RCL AGMND ++KP+  D 
Sbjct: 868  MDMQMPLMDGLDATREIRQLQRHRQTPILAMTANAFAEDKARCLGAGMNDFIAKPVNPDV 927

Query: 1101 FYQVLRHFL 1109
             Y  L  +L
Sbjct: 928  LYATLLQWL 936