Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1430 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  446 bits (1148), Expect = e-129
 Identities = 289/753 (38%), Positives = 430/753 (57%), Gaps = 28/753 (3%)

Query: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
            EL  AKEAA+A +++K  FLANMSHEIRTPMNAI+G+ HL         QR+ + +++ +
Sbjct: 673  ELAAAKEAAEAANRSKSSFLANMSHEIRTPMNAIIGLTHLIRRDIATERQRQQLDKVSNA 732

Query: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
            A +LLGIINDILDFSK+EAGK+++E  DF +D V+ NV  +V+ KA+ KG+E ++DI   
Sbjct: 733  AHHLLGIINDILDFSKIEAGKMSLEPTDFEVDRVIHNVCTLVAEKAEAKGLEVVVDI-AR 791

Query: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIA 771
            +P  L GD LRLGQV++N  GNAVKFT +G +V+   V++     + +R  V DTGIG++
Sbjct: 792  LPPALHGDGLRLGQVLLNFVGNAVKFTERGSVVVRGYVARQEADSLWVRLEVADTGIGLS 851

Query: 772  QDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVV 831
            +++   LF AF+QAD S TRQYGGTGLGL+IS++L E+MGG++ V SE GKGSTF     
Sbjct: 852  REQQQCLFQAFTQADVSTTRQYGGTGLGLAISRRLAEMMGGRVGVDSESGKGSTFWIEAP 911

Query: 832  CGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
             G   A    +  P     + R L VDD++ AR  L   L A+   V T ++G  AL  +
Sbjct: 912  FG-SVAAHDHLELPPCLPRNLRALAVDDSEDARESLAHTLAALGTRVDTAASGEAALDAV 970

Query: 892  QQ-----KPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSK 946
                    P+ ++ +DW MP  +G+E    ++TL L    +  LV+A  ++I     +  
Sbjct: 971  LAADRLGDPYQLVLLDWLMPPPDGLETGRCIRTLPLNVQPQQLLVSA-AKDIPATALSEA 1029

Query: 947  LVDALIVKPVNPSNLLDAIVTSYG-IEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQE 1005
               A I KPV P+++L A+  ++G    +     +    S   +  Q +LL EDN +NQE
Sbjct: 1030 GFAAFIAKPVTPASVLVALEGAFGDTPPLSRSPGDEMERSLARYRNQRILLAEDNPLNQE 1089

Query: 1006 VALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHS 1065
            VAL LL+  GL V +A +G+EALE      + L+LMD+QMPVMDG+ A+  IRA P +  
Sbjct: 1090 VALELLRHVGLAVDLAENGKEALELARGKAYALILMDIQMPVMDGLEASRQIRALPGYAG 1149

Query: 1066 LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKP 1125
             PI+AMTANA + D + C+ AGMNDH++KP++ D+ Y  L  +L            P  P
Sbjct: 1150 TPILAMTANAFSEDRDLCIAAGMNDHVAKPVDPDQLYGTLLRWLPEPGRDVVV--RPPLP 1207

Query: 1126 SASKPAMNA---LLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLI 1182
            +A  PA  A      L  + G++L QA+  + GN+ R  + LR F      +   +   +
Sbjct: 1208 AAEAPAATADALAAALEAVPGLELAQALRVVRGNRTRLAQFLRKFSVDHGGDGRRIEACL 1267

Query: 1183 EAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPSFEL---LQQAQSLLT 1239
               + + A RV HTLKG A +LGL A+      +E++L    LP  E+   L + +  L 
Sbjct: 1268 GFGETAEAARVVHTLKGLAGSLGLAAIQAHTLALEEALRGS-LPQAEVDARLARLEGALA 1326

Query: 1240 QVDDELSAWEHQHKEPLLAENLDW---GLWYQQLQQAINDYDVTALSLSKSIRQVSQWD- 1295
            + +  L+  E   +    A  +DW   G   + LQ+ +   D+ A    +S+R   +   
Sbjct: 1327 EFNAALAGLEGAVE--AAAPGIDWAQLGREVEVLQRQLAVDDLDASRTFQSLRPTLEAAL 1384

Query: 1296 SAQQAALISAIEDFDFEQA----KALLASYPQL 1324
             A+   L + I+DF+ E+A    +AL+ + P+L
Sbjct: 1385 GAEVRTLAAQIDDFNLEEALHTLQALIDAEPRL 1417