Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1689 a.a., sensory transduction histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  399 bits (1025), Expect = e-114
 Identities = 292/903 (32%), Positives = 455/903 (50%), Gaps = 59/903 (6%)

Query: 456  NAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDK 515
            N  ++RL +R +  +  L + +L  +P  ++ +  +G    VNA+   + GL     +  
Sbjct: 814  NLAERRLVDRLIRHERNLLKNVLGMSPIGVW-VCVNGTCRYVNAQMTLMTGLEVEHAVAD 872

Query: 516  ---EPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADK 572
               +P++ +        A   + +T +   + Y   ++D         V   ++    D 
Sbjct: 873  IFLQPKDYW--HYIRELAPEQECITFESKLKGYHGQILD---------VLFTAYPTFYDG 921

Query: 573  VNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLA 632
             +  +   LD+T+ K ++ EL  AK  ADA ++AK DFLANMSHEIRTPMNAI+GM++LA
Sbjct: 922  QHANLCWALDITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIGMSYLA 981

Query: 633  LNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAV 692
            L T L   ++ Y+ +++++A +LL IINDILDFSK+EA KL VE I+F+LD+VL  +  V
Sbjct: 982  LQTDLAEKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLDEVLTQLNNV 1041

Query: 693  VSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQL 752
            +  K +E  +  + DI    P   IGDP RLGQ+++N C NAVKF+ +G  +L +  ++L
Sbjct: 1042 IGFKVEENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSDILLSCQAEL 1101

Query: 753  NEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGG 812
            ++Q  TL F V D GIGI  DK   LF +F Q D S +R+YGGTGLGL+I K+L ELM G
Sbjct: 1102 DKQGATLTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAICKRLSELMQG 1161

Query: 813  QITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVD--DNDSARHILDSL 870
            ++   SE G+GS F   +   L   K  D+S     L  + + +V    + SA +   + 
Sbjct: 1162 EVWCESELGQGSRFYLRLHLPL--VKPYDLSTQFAALQGESLSIVGFMPDLSAIYSRFAA 1219

Query: 871  LTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFL 930
               M+   + +      LS    +   M   +   P +  + L      L L G+     
Sbjct: 1220 RVGMQARTLEMHMALAELSACTSQHLIMCETNAFEPELLSVVLANDKLGLLLIGNGSE-- 1277

Query: 931  VTAYGREINLDGENSKLVDALIVKPVNPS--NLLDAIVTSYGIEHVRHKTNEAHHNSRPN 988
              A    ++   +       ++++ +  S   LL+     +G +H+ H++     N    
Sbjct: 1278 PVAIQSLVDKHPQIIAKQHPILLRTLGESLLLLLNRDRAPFG-QHLEHQSITTLKN---Q 1333

Query: 989  FAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVM 1048
             AG  LLLVEDN +NQE+A+ LL+  G  V VA HGQEAL  L    FD VLMD QMPVM
Sbjct: 1334 LAGVELLLVEDNYLNQELAVELLRQAGARVTVAQHGQEALTLLAQQSFDCVLMDGQMPVM 1393

Query: 1049 DGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108
            DG  AT  IRA P++  LPI+AMTANAM  D ER L AGMN  ++KP +V + Y  +   
Sbjct: 1394 DGYEATRLIRAQPQFADLPIIAMTANAMDSDRERALAAGMNAQINKPFQVQQLYSTIAQH 1453

Query: 1109 LQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFI 1168
            + V   QS    SP      K  +     LP +  +D++  +     N   Y  +L  F+
Sbjct: 1454 VSVHSVQSL-PESPEAHDLDKAQLKQ--GLPLVEELDIDAGLALCNYNADLYRHLLTLFV 1510

Query: 1169 DSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLG-----------------LEALAQ 1211
             +    L +        + S+     HTLKG A N+G                 + +L Q
Sbjct: 1511 QTGAKLLQNQQNEFSQDNLSALRLSLHTLKGVAGNIGAVSLKEDSGRLEASLTDISSLQQ 1570

Query: 1212 LAAEMEQSLEQQVLPSFELLQQAQSLLTQVDDELSAWEHQHKEPLLAENL---DWGLWYQ 1268
            L A +++++ Q++      LQQ  +LL +       W+  ++    ++++   +    + 
Sbjct: 1571 LDANIQETVSQEIHLLHAKLQQLLTLLAE-------WQTVNQPDEASQSISMTELMRLFA 1623

Query: 1269 QLQQAINDYDVTALSLSKSIRQVSQWDSAQQ--AALISAIEDFDFEQAKALLASYPQLSG 1326
            QL Q + +Y+  ALSL + + Q++     +Q  A L  A   FDF Q   L     + + 
Sbjct: 1624 QLTQNLKEYNTDALSLVERLSQLTVLQPQRQLIAELKQATGQFDFSQGLELAIQLQEWAQ 1683

Query: 1327 ERL 1329
            ++L
Sbjct: 1684 QQL 1686