Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  434 bits (1117), Expect = e-125
 Identities = 273/683 (39%), Positives = 396/683 (57%), Gaps = 52/683 (7%)

Query: 455  QNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID 514
            ++AEQ RL+E +           +DA  + ++    D + +  N  +  ++G   NE   
Sbjct: 525  ESAEQLRLSEERY-------HLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPNE--- 574

Query: 515  KEPQEIFPAEVAERFAAAH---QVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFS---- 567
                  FPA V+      H   ++  ++  +Q  E + VD   ++  +L   +S+     
Sbjct: 575  ------FPALVSAIDQLTHPDDRIRVEEYRNQYLE-NPVDAYEIEFRILGKNSSYHWVLS 627

Query: 568  -------DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRT 620
                       +   +VG   D+T  K  E  L +AK+ A+  +  K +FLANMSHEIRT
Sbjct: 628  RGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRT 687

Query: 621  PMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDF 680
            PMNAI+GM  LA  T L   Q+ Y+ +   SA++LL IINDILDFSK+EAGKL +ER+ F
Sbjct: 688  PMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPF 747

Query: 681  NLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ 740
             LD VLD+   + +LKAQE+G+E L+       L L GDPLRLGQV++NL  NAVKFT  
Sbjct: 748  PLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQS 807

Query: 741  GEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGL 800
            GEI L        + ++TL+F V+DTGIGI++D+ + LFDAF+QAD S TR+YGGTGLGL
Sbjct: 808  GEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGL 867

Query: 801  SISKQLVELMGGQITVHSEEGKGSTFEFSVVCGL-QDAKMRDISQPVHGLADKRVLVVDD 859
            SISK LV +MGG++ V SE G GSTF F++   + ++AK+  +  P   L + R LVVDD
Sbjct: 868  SISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIAEEAKIEPLVVP-EKLNNLRTLVVDD 926

Query: 860  NDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKT 919
            N +A  I  +L+    F V T ++G EAL ++ + P D+L +DW MP M+G ++++ + T
Sbjct: 927  NPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSDVISAIDT 986

Query: 920  LGLRGHMKS----FLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEH-- 973
            +   G +       ++TAY  E  L   +S  V A++ KP   S+L D I+ ++  E   
Sbjct: 987  MVAEGRIAKRPIIIMMTAYAAEPLLHEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRL 1046

Query: 974  ------VRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEA 1027
                        E  H          +LLVEDN +NQ+VA  LL+  G  VVVA +GQ A
Sbjct: 1047 NVVQPIAEVAVEEGEHTG-------LVLLVEDNFINQQVATELLKSAGYEVVVAGNGQIA 1099

Query: 1028 LERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAG 1087
            L+ ++   FD VLMD+QMPVMDG+TA   +R       LPI+AMTA+AM+ D E+ L AG
Sbjct: 1100 LDIVDSRPFDAVLMDIQMPVMDGLTAARALRERYSADVLPIIAMTAHAMSGDREKSLAAG 1159

Query: 1088 MNDHLSKPIEVDKFYQVLRHFLQ 1110
            MN H++KPI + + ++ L H+++
Sbjct: 1160 MNAHITKPIVLTELFETLTHWIK 1182



 Score = 45.8 bits (107), Expect = 2e-08
 Identities = 34/173 (19%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 453 LSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEV 512
           +++  E+ + A  +   +  L + +LD+ P  +     +G +L  N     ++G   +E+
Sbjct: 391 VARRTERLKDATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM 450

Query: 513 IDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADK 572
           I    +++   E+  R  A    + + ++   Y+   V+  G    +   +  F +R  +
Sbjct: 451 IGLSSEDLTSPEMGIRIRAEDAQILKDRTPLRYQEK-VELAGKPVLLDTLKLPFYNRRGE 509

Query: 573 VNGIVGILLDMTERKEMEDELRKAKE----AADAMSQAKGDFLANMSHEIRTP 621
           + G++ +  D+T   E  ++LR ++E    A DA+     D+  +  H I  P
Sbjct: 510 LQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNP 562