Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., PAS-family sensor histidine kinase from Caulobacter crescentus NA1000

 Score =  239 bits (609), Expect = 7e-67
 Identities = 180/591 (30%), Positives = 312/591 (52%), Gaps = 31/591 (5%)

Query: 404 IALNEVYYLPLQVNNQPIALLELGTVGMLTMQQY---HWLS-------QMLDDLSVAIQL 453
           +A+   Y + + + N+P A + + T+ + T+      +WL+        M  +L  ++  
Sbjct: 23  VAMAMDYIVTILLLNEPAAYVPIATLVISTIIAVPLAYWLAGQRLRLETMHAELKASLDA 82

Query: 454 SQNA-EQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEV 512
            Q+A E   +A  K  E  +L + + D   + +   S  G+ L  +     + G    E 
Sbjct: 83  KQDAIEDAEVALAKYREVDRLYRLLGDNLTDHVALWSPLGERLYSSPSIERITGYTLEEF 142

Query: 513 IDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQRE--MLVYEASFSDRA 570
           +   P  +    V E      Q + +        VS  DY  + ++   +  E+++S   
Sbjct: 143 MALPPAAL----VGEADFRRVQGIIRSLEPGGEPVS-ADYESLCKDGSRIWVESTYSLLG 197

Query: 571 DKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630
           D    ++    D+TERK +E ++ KA + A+A S AK DFLANM+HE+RTP+ AI+G A 
Sbjct: 198 DGSGILLVTSRDITERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAIIGFAE 257

Query: 631 -LALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNV 689
            L  +  L+ T  + V  I +++  LL ++ND+LDFS++EAG L ++   F+   +  + 
Sbjct: 258 VLRRSRNLNKTAARQVGHILDASNTLLSVVNDVLDFSRLEAGGLELDPAPFDPAAMASSC 317

Query: 690 TAVVSLKAQEKGIEFLMDIDPHIPLGLIG---DPLRLGQVMVNLCGNAVKFTSQGEIVLS 746
             +V+ +A+ KG+     ++   P GL     D  RL QV++N   NAVKFTS G I ++
Sbjct: 318 AGLVAERAEAKGLA----VEVRAPRGLKPMNLDGPRLSQVLLNFLSNAVKFTSHGAITVA 373

Query: 747 ARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQL 806
            R + ++  Q  LR  V DTGIGIA +  +++FD FSQAD +++R++GGTGLGL+IS+++
Sbjct: 374 LRQT-IDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISRRI 432

Query: 807 VELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDI--SQPVHGLADKRVLVVDDNDSAR 864
           +E M G+I V S EG+GSTF F V   L D   ++   + P+   A  R+L+V+DN   R
Sbjct: 433 IERMDGRIGVDSVEGQGSTFWFEVRGPLADLPTQEAVETSPLDADAGVRLLLVEDNAVNR 492

Query: 865 HILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTL-GLR 923
            ++ ++L      + T ++G   +  ++Q  +D++ +D  MP M+G+     ++ + G R
Sbjct: 493 ELICAILEPFGVAIETANDGVAGVEAMRQGHYDLVLMDVQMPMMDGLTATREIRAMEGAR 552

Query: 924 GHMKSFL-VTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEH 973
           G     + +TA      +    +  +D  + KP++P+ LL+A+    G  H
Sbjct: 553 GASTPIIAMTANVLPEQVANCMAAGMDDHLGKPISPAKLLEAVARWSGRSH 603



 Score =  108 bits (271), Expect = 1e-27
 Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 2/118 (1%)

Query: 990  AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMD 1049
            AG  LLLVEDN VN+E+   +L+  G+ +  AN G   +E +    +DLVLMD+QMP+MD
Sbjct: 478  AGVRLLLVEDNAVNRELICAILEPFGVAIETANDGVAGVEAMRQGHYDLVLMDVQMPMMD 537

Query: 1050 GITATEHIRA--NPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVL 1105
            G+TAT  IRA    R  S PI+AMTAN +   +  C+ AGM+DHL KPI   K  + +
Sbjct: 538  GLTATREIRAMEGARGASTPIIAMTANVLPEQVANCMAAGMDDHLGKPISPAKLLEAV 595