Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  430 bits (1106), Expect = e-124
 Identities = 267/772 (34%), Positives = 438/772 (56%), Gaps = 48/772 (6%)

Query: 568  DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILG 627
            DR   V  ++GI +D+T ++++E  LR AK+ AD  + AK  FLANMSHEIRTPMNA+LG
Sbjct: 861  DRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLG 920

Query: 628  MAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLD 687
            M  L   T L   Q+ YVT+   +AK+LLG++NDILDFSK++AGKL ++    +++ ++ 
Sbjct: 921  MLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMR 980

Query: 688  NVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSA 747
            ++  V+S       +E + D+D  +P  L+ D LRL Q+++NL GNA+KFT  G++++  
Sbjct: 981  DLAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGL 1040

Query: 748  RVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLV 807
               +   + VT++F++ D+GIGI++++++ +F  F QA++S +R++GGTGLGL+ISK+LV
Sbjct: 1041 ECLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLV 1100

Query: 808  ELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHIL 867
            ELMGGQ+ V S+ G GS F F +   + + +    + P   L+  R+LVVDDN     IL
Sbjct: 1101 ELMGGQLQVTSKVGVGSRFWFDLTFPVMEVE----ANPRADLSGYRILVVDDNQITTEIL 1156

Query: 868  DSLLTAMRFNVVTVSNGFEALSEIQQ-----KPFDMLFVDWNMPGMNGIELLTRVKTLGL 922
              +L+     V T S G++A+ +++Q     + FD++ +DW MP ++G++    +K  G 
Sbjct: 1157 SKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGT 1216

Query: 923  RGHMK-SFLVTAYGREINLDGENSKLVDAL--IVKPVNPSNLLDAIVTSYGIEHVRHKTN 979
              +     ++TAYG E+  + ++   V  +  + KPV    L +A++ +     +  KT 
Sbjct: 1217 GSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQILAEAVLNA-----IEGKTM 1271

Query: 980  EAHHNSRPN--FAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALER-LEHAD- 1035
            +A+   R     AG +LL+VEDN++N+EV   LL   G  VV+A  G E + + L+  D 
Sbjct: 1272 DANPKPRSQRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDM 1331

Query: 1036 FDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKP 1095
            FD V+MDMQMP +DG+ AT  IRA+ R+  LPI+AMTANA   D + CL+AGMN H+SKP
Sbjct: 1332 FDAVIMDMQMPDIDGLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKP 1391

Query: 1096 IEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGG 1155
            I++ +    +   +     Q     S +  +        LLD       D+   + R GG
Sbjct: 1392 IDMQQLLPNILRLVGRDAAQFAEPESMHLDAQHNLEGETLLD-------DIRLILRRFGG 1444

Query: 1156 NQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAE 1215
            NQ  + ++   F    + +L+      +  D+++   ++H +KG A+N G   LA  AA 
Sbjct: 1445 NQVFFEKMASSFAPEMIKQLSLFKQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAF 1504

Query: 1216 MEQSLEQQVLPSFEL---LQQAQSLLTQVDDELSAW--EHQHKEPLLAENLDWGLWYQQL 1270
            +E+  +Q+ L   E+       +SL+ Q  ++LS +  + Q K+   +E+ +  +  Q +
Sbjct: 1505 LEKQFKQEGLELLEIKRWTDTLESLINQSIEQLSGFLPKTQLKQSQSSESANGVVDIQSV 1564

Query: 1271 QQAI---------NDYDVTAL--SLSKSIRQVSQW----DSAQQAALISAIE 1307
            +  +         N+ +   L   L+K + Q  QW       Q  A + A+E
Sbjct: 1565 RAELDNLASLLQENNLEAVTLVDKLAKPLSQHPQWTELNGQVQSLAFMQALE 1616