Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  286 bits (732), Expect = 7e-81
 Identities = 223/682 (32%), Positives = 347/682 (50%), Gaps = 58/682 (8%)

Query: 580  LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT 639
            L D++ERK  E +L++AKE A+  S+ K  FLA MSHEIR+P+NAILG   L L++ L  
Sbjct: 471  LRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSLSK 530

Query: 640  TQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQE 699
             QR +     E+   LL  INDILDFSK+EAG++ +E  +F  D ++  V  ++  KA E
Sbjct: 531  DQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFE 590

Query: 700  KGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTL 759
            KG+E +  ++ ++P  ++GD  RL QV+ NL  NA+KFT+ G I +   +   ++ +V L
Sbjct: 591  KGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMWIPDNHQTEVQL 650

Query: 760  RFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSE 819
               V D+GIGI+ +    LF  FSQ  ++    Y GTGLGL+I  +L+ +MGG I + SE
Sbjct: 651  YCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIELQSE 710

Query: 820  EGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVV 879
             G+GS F F V   L +    +     +  A  RVL+   + +   ++    +      V
Sbjct: 711  LGQGSRFTFYVSLQLLEG---NFCHSHYFPAHSRVLLAHHDATWLSLVSKQYSQYGVETV 767

Query: 880  TVSN--GFEALSEIQQKPFDML------FVDWNMPGMNGIELLTRVKTLGLRGHMKSFLV 931
             V +    +   +I+ + F+++      F+D N   +N +    R   L   G M + LV
Sbjct: 768  EVMDWPSIKRAKKIKGQ-FNLILLDEGFFLDVNEQDVNRL----RQAHLTADGSMVA-LV 821

Query: 932  TAYGREINLDGENSKLVDALIVKPVNPSNLL-----DAIVTSYGIEHVRHKTNEAHHNSR 986
            +    EI        L D ++ KP++ +  L     DA+   +  E+V  +  + H    
Sbjct: 822  SGMSTEITHSLATLGL-DQVVNKPLSRAMQLALLSKDALANEFEEEYVAQEKFQGH---- 876

Query: 987  PNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMP 1046
                   +LL ED+  NQ +A  +L   G ++  A +G EA++ +    FDLVLMD++MP
Sbjct: 877  -------ILLAEDSPANQIIAGTMLTKAGFDITYACNGLEAVKLVAEKPFDLVLMDVRMP 929

Query: 1047 VMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLR 1106
             MDG+ ATE I  N       I+AM+AN M  +IE C + GM D ++KP++       ++
Sbjct: 930  EMDGLEATEVILQN--HPEQVILAMSANVMKEEIEHCYRVGMKDFIAKPVKQKTLLHAIQ 987

Query: 1107 HFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRH 1166
             +L  +     SSH P + +AS      LLD   L   +LEQ +      +     ++  
Sbjct: 988  KWLPNAVVSLPSSHKPAENTAS------LLDEQLL--AELEQTL-----GKASLSNMMTI 1034

Query: 1167 FIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLP 1226
            F D     LN ++ L ++         AHTLK S+ + G  AL  LA ++E    QQ L 
Sbjct: 1035 FCDELAQRLNQLSEL-DSTQVDEIEDQAHTLKSSSGSFGATALFLLAQKLEACARQQQLG 1093

Query: 1227 SFELL--------QQAQSLLTQ 1240
            +   L        +Q  SLLT+
Sbjct: 1094 AIPELMAQINVLGKQTHSLLTE 1115