Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

 Score =  434 bits (1116), Expect = e-125
 Identities = 270/668 (40%), Positives = 392/668 (58%), Gaps = 22/668 (3%)

Query: 455  QNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNE--- 511
            ++AEQ RL+E +           +DA  + ++    D + +  N  +  ++G   NE   
Sbjct: 573  ESAEQLRLSEERY-------HLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPNEFPA 625

Query: 512  VIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRAD 571
            ++    Q   P +        +Q L     +   E  ++   G    +L         AD
Sbjct: 626  LVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNGSYHWVLSRGRVVEFTAD 685

Query: 572  -KVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630
             +   +VG   D+T  K  E  L +AK+ A+  +  K +FLANMSHEIRTPMNAI+GM  
Sbjct: 686  GQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQ 745

Query: 631  LALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVT 690
            LA  T L   Q+ Y+ +   SA++LL IINDILDFSK+EAGKL +ER+ F LD VLD+  
Sbjct: 746  LAQRTSLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHAL 805

Query: 691  AVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVS 750
             + +LKAQE+G+E L+       L L GDPLRLGQV++NL  NAVKFT  GEI L     
Sbjct: 806  DLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDV 865

Query: 751  QLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELM 810
               + ++TL+F V+DTGIGI++D+ + LFDAF+QAD S TR+YGGTGLGLSISK LV +M
Sbjct: 866  GERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMM 925

Query: 811  GGQITVHSEEGKGSTFEFSVVCGL-QDAKMRDISQPVHGLADKRVLVVDDNDSARHILDS 869
            GG++ V SE G GSTF F++   + ++AK+  +  P   L + R LVVDDN +A  I  +
Sbjct: 926  GGKMQVQSELGVGSTFSFTISFEIAEEAKVEPLVVP-EKLNNLRTLVVDDNPTALQIYSA 984

Query: 870  LLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKS- 928
            L+    F V T ++G EAL ++ + P D+L +DW MP M+G ++++ + T+   G +   
Sbjct: 985  LMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGDVISAIDTMVAEGRIAKR 1044

Query: 929  ---FLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNS 985
                ++TAY  E      +S  V A++ KP   S+L D I+ ++  E   +       + 
Sbjct: 1045 PIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRLNVVQPI--DE 1102

Query: 986  RPNFAGQS---LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMD 1042
             P   G+    +LLVEDN +NQ+VA  LL+  G  VVVA +GQ AL+ ++   FD VLMD
Sbjct: 1103 LPVEEGEHTGLVLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMD 1162

Query: 1043 MQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFY 1102
            +QMPVMDG+TA   +R       LPI+AMTA+AM+ D E+ L AGMN H++KPI + + +
Sbjct: 1163 IQMPVMDGLTAARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELF 1222

Query: 1103 QVLRHFLQ 1110
            + L H+++
Sbjct: 1223 ETLSHWIK 1230



 Score = 47.0 bits (110), Expect = 1e-08
 Identities = 34/173 (19%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 453 LSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEV 512
           +++  E+ + A  +   +  L + +LD+ P  +     +G +L  N     ++G   +E+
Sbjct: 439 VARRTERLKDATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM 498

Query: 513 IDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADK 572
           I    +++   E+  R  A  + + + ++   Y+   V+  G    +   +  F +R  +
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEK-VELAGKPVLLDTLKLPFYNRRGE 557

Query: 573 VNGIVGILLDMTERKEMEDELRKAKE----AADAMSQAKGDFLANMSHEIRTP 621
           + G++ +  D+T   E  ++LR ++E    A DA+     D+  +  H I  P
Sbjct: 558 LQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNP 610