Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1686 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  441 bits (1133), Expect = e-127
 Identities = 311/896 (34%), Positives = 473/896 (52%), Gaps = 65/896 (7%)

Query: 462  LAERKVLE-----QSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKE 516
            L+ERK++      +  L + +L  +P  ++ +  +G    VN +  ++ GL       + 
Sbjct: 822  LSERKLMNALLERERDLLKHVLGRSPIGVW-ICIEGVCRYVNEQITEMTGL-------QV 873

Query: 517  PQEIFPAEVAERFAAAH-QVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNG 575
             Q ++P          H   L   Q S  +E  L D  G +R++L+   ++    D  N 
Sbjct: 874  GQSVYPIFAQPDDYRCHISELDLSQDSTVFETQLFDCKGQRRDVLL--TAYHTVQDGQNA 931

Query: 576  IVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635
             +   LD+T+ K ++DEL  AK+AA+A ++AK DFLANMSHEIRTPMNAILGM++L L T
Sbjct: 932  NLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFLANMSHEIRTPMNAILGMSYLVLQT 991

Query: 636  PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSL 695
             L + QR YV +++++A +LLGI+NDILDFSK+EA K+++E   F+LDDVL N+  VVS 
Sbjct: 992  ELSSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKMDIECAVFDLDDVLSNLANVVSY 1051

Query: 696  KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQ 755
            K +EK + F+ D+ P +P    GD LRLGQ+++N C NAVKF+     V+ +  S+++ +
Sbjct: 1052 KVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNNAVKFSHNDSNVVLSCESKVHGE 1111

Query: 756  QVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQIT 815
            QV L F V+D GIGI + K   LF +F Q D S +R+YGGTGLGL+I K+L  LMGG++ 
Sbjct: 1112 QVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVW 1171

Query: 816  VHSEEGKGSTFEFSVVCGLQDA-KMRDISQPVHGLADKRVLVVDDNDSARHILDSLLT-- 872
              SE G GS F   +     D      +  P+ G   K +            LD LLT  
Sbjct: 1172 CESELGVGSRFYVRLTLDCADTYDPNALFDPLAGETAKLI-------GLHPRLDKLLTIH 1224

Query: 873  --AMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELL-----TRVKTLGLRGH 925
              +    V +   G       Q     +L  D++      +E L     +R+  +G    
Sbjct: 1225 GVSANMQVESADVGTVIAQLKQSSTRQLLICDYSAFVPELLEALAVNQASRMLLIGQLSD 1284

Query: 926  MKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHV---RHKTNEAH 982
              S           L   N +++     KP+ P  + +A+++  G +     + + + + 
Sbjct: 1285 QDSLR--------QLIENNDRVISQ--TKPLTPIAIGNALLSLLGHQSEDGRQVQQDHSL 1334

Query: 983  HNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMD 1042
            H  +   AG  +LLVEDN++NQE+A+ LL+  G+NV VANHG EA+ER+E   FD VLMD
Sbjct: 1335 HALKTQLAGAEVLLVEDNQLNQELAVELLRQAGINVTVANHGLEAIERVEQQYFDCVLMD 1394

Query: 1043 MQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFY 1102
             QMPV+DG  AT  IR  P++ +LPI+AMTANAM+ DIE+ L  GMND ++KP+ V   Y
Sbjct: 1395 CQMPVLDGYEATRRIRELPQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLY 1454

Query: 1103 QVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFE 1162
             V+  ++     +S        P   K + +A  DLPQL G+ ++  +     N+  Y  
Sbjct: 1455 TVMARWITPKQRKSV-------PLVLKRSTHA-QDLPQLEGLSIQNGLSHCDHNESLYSH 1506

Query: 1163 ILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEME-QSLE 1221
            +L  FI++    L       + ++        HTLKG AAN+G   +++LA+E+E Q L 
Sbjct: 1507 LLGLFINTSKTLLGQQQRAWQEENADELRLSLHTLKGVAANVGAMEISRLASELELQCLT 1566

Query: 1222 QQVLPSFELLQQAQSLLTQVD---DELSAWEHQHK----EPLLAENLDWGLWYQQLQQAI 1274
             +   + EL +Q  +L T++      L  W  Q+     E   ++     +W  QL+Q++
Sbjct: 1567 AKRSFTVELHEQLLALQTELQCLVSGLEIWYQQNNSIKPEASFSDEALAAMW-PQLEQSL 1625

Query: 1275 NDYDVTALSLSKSIRQVS--QWDSAQQAALISAIEDFDFEQAKALLASYPQLSGER 1328
             +Y+  AL     +      Q +S     L   +E FDFEQA   L +  Q    R
Sbjct: 1626 LEYNTNALEWVNKLTHAPQLQGESGLLKQLKMDVELFDFEQALVRLLTLKQAQQAR 1681