Pairwise Alignments

Query, 379 a.a., two-component system response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., Response regulator containing a CheY-like receiver domain and an HD-GYP domain from Pseudomonas stutzeri RCH2

 Score =  215 bits (548), Expect = 1e-60
 Identities = 127/380 (33%), Positives = 203/380 (53%), Gaps = 17/380 (4%)

Query: 1   MSMEDLSQCTILIVDDSPDNIAFMSQGLAQY--YRIKAARSGKVALEILAQYPIDLVLLD 58
           M  +++   T++++DD   ++  +   +      RI A       L  L Q   DL+LLD
Sbjct: 1   MLSDEIRHSTVVVIDDITASLRLLESSVRAIGVQRIMAFSDSAAGLAWLQQNDWDLLLLD 60

Query: 59  IVMPEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLK 118
           + MP  +G++++  +    H     V+ ++  S+ E      +LGA D++ KP+ +P L 
Sbjct: 61  VDMPAPNGFDILRSLSGREHNRM--VVMVSALSDRESRCSSLKLGANDFISKPLDLPELL 118

Query: 119 SRVHTHLQNKRSKDILLNQNDYLETEVLRRSGELDRMQDAVVFALASLAETRDPETGNHL 178
            RV   LQ   +   L  + + LE +V  R+ +L+    +V+ +L+  A+ +D ETG H+
Sbjct: 119 LRVRNQLQLSWASKQLKIERETLERKVCERTEQLNASYQSVICSLSRAAQYKDDETGQHI 178

Query: 179 LRTQHYVKVLAQRLATTDKYRDVLSPTVIDTYFKAAPLHDIGKVGIPDNILLKPGKLTPD 238
           +R      ++A  L    ++        ++    AAP+HD+GK+GIPD+ILLKPG LT  
Sbjct: 179 IRIGESAALIAAALGQPAEW--------VERIRLAAPMHDVGKIGIPDHILLKPGTLTDL 230

Query: 239 EFTTMRNHALLGKLALEKAEKLSGACTALINVAKEIAMGHHEKWDGSGYPLGLKGDDIPL 298
           E   M+ H  +G   L   E+     + L+ +A EIA+ HHE+WDG+GYP GLKG++IPL
Sbjct: 231 ERKIMQRHTQIGHAILRDGEE-----SPLLEMAAEIALYHHERWDGTGYPHGLKGEEIPL 285

Query: 299 SARLMALADVYDALICRRVYKEPMSHEEAKAIILQGRGSHFDPMVIDAFLIEEQNFIDIA 358
           +AR++AL DVYDAL   R YKE  S E A+A I +  G +FDP ++D      Q   D+ 
Sbjct: 286 AARVVALCDVYDALRSPRPYKESWSKERAQAYICEQAGLYFDPALVDVLNGMFQQIEDMQ 345

Query: 359 QKFADEESAMVPIQLGQQAS 378
              AD  +    +   Q+ S
Sbjct: 346 DSLADPLAQTASVGAEQEYS 365