Pairwise Alignments

Query, 379 a.a., two-component system response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., HD domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (280), Expect = 2e-29
 Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 20/243 (8%)

Query: 117 LKSRVHTHLQNKRSKDILLNQNDYLETEVLRRSGELDRMQDAVVFALA-----SLAETRD 171
           +K  + T  + +    ++L +   L  +VL  + E   ++ A   ALA     S+    D
Sbjct: 83  VKKSIVTREKQQEQAQVILTEAKDLIRKVLSETFEGKAIEVAPFEALADSMIESVLLDED 142

Query: 172 PETGNHLLRT------QHYVKVLAQRLATTDKYRDVLSPTVIDTYFKAAPLHDIGKVGIP 225
                  LRT      +H V V A  L T  KY   L  +++        LHDIGK+ + 
Sbjct: 143 ALKCMSALRTKDAYLLEHSVNV-AFLLVTFGKYLK-LDRSMLREMAVGGILHDIGKIKVD 200

Query: 226 DNILLKPGKLTPDEFTTMRNHALLGKLALEKAEKLSGACTALINVAKEIAMGHHEKWDGS 285
           + +L KPGKLTP+EF  M+ H +    ALE   +  G    L  ++K++ + HHEK DG 
Sbjct: 201 NKVLHKPGKLTPEEFEHMKLHQVY---ALEIMSETKG----LSQISKDVCLMHHEKLDGR 253

Query: 286 GYPLGLKGDDIPLSARLMALADVYDALICRRVYKEPMSHEEAKAIILQGRGSHFDPMVID 345
           GYP GLKGD+IPL  R+  + D++DAL   R YKE MS   A  I+L     H D  ++ 
Sbjct: 254 GYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAFKILLSLTPFHLDQQLVY 313

Query: 346 AFL 348
            F+
Sbjct: 314 DFI 316