Pairwise Alignments

Query, 379 a.a., two-component system response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., HD domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  197 bits (502), Expect = 3e-55
 Identities = 102/193 (52%), Positives = 128/193 (66%), Gaps = 1/193 (0%)

Query: 156 QDAVVFALASLAETRDPETGNHLLRTQHYVKVLAQRLATTDKYRDVLSPTVIDTYFKAAP 215
           + A V  LA LAE RD ETG HLLR + Y K+LA +    +     L    I     +A 
Sbjct: 203 RQATVLGLAKLAEYRDNETGAHLLRMRQYSKMLAAQRMLAENPPPELDEDFIQDISLSAI 262

Query: 216 LHDIGKVGIPDNILLKPGKLTPDEFTTMRNHALLGKLALEKAEKLSGACTALINVAKEIA 275
           LHDIGKVGI D ILLKPG+LTP+EF  ++ H ++G   L    + +  CT  I + ++IA
Sbjct: 263 LHDIGKVGIADAILLKPGRLTPEEFEQIKAHPVIGGQVLASLLEYAPRCT-FITMGRDIA 321

Query: 276 MGHHEKWDGSGYPLGLKGDDIPLSARLMALADVYDALICRRVYKEPMSHEEAKAIILQGR 335
            GHHEKWDGSGYPLGLK ++IPLSAR++AL DVYDAL   R YK P SHEEA A+IL+GR
Sbjct: 322 SGHHEKWDGSGYPLGLKEENIPLSARIVALVDVYDALTSPRCYKRPFSHEEALALILEGR 381

Query: 336 GSHFDPMVIDAFL 348
             HFDP ++D F+
Sbjct: 382 AKHFDPALVDCFM 394