Pairwise Alignments

Query, 379 a.a., two-component system response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  273 bits (698), Expect = 5e-78
 Identities = 144/342 (42%), Positives = 211/342 (61%), Gaps = 21/342 (6%)

Query: 6   LSQCTILIVDDSPDNIAFMSQGLAQYYRIKAARSGKVALEILAQYPIDLVLLDIVMPEMS 65
           + + TIL+VDD+P+NI  +   L + Y++K A  G  AL ++ +   DL+LLD++MP M+
Sbjct: 2   MDKATILVVDDTPENIDILVGILGEDYKVKVAIDGPRALALVTKTLPDLILLDVMMPGMN 61

Query: 66  GYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHTHL 125
           GYEV   +K  P T HIPVIF+T  S   DE  GF LGAVDY+ KPVS P++K+RV THL
Sbjct: 62  GYEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPVSAPVVKARVKTHL 121

Query: 126 QNKRSKDILLNQNDYLETEVLRRSGELDRMQDAVVFALASLAETRDPETGNHLLRTQHYV 185
                   L +Q   LE +V  R+ EL+  +  ++  L   AE +D ETG H++R  HY 
Sbjct: 122 -------ALYDQKRLLEQQVKERTQELEETRFEIIRRLGRAAEYKDNETGLHVVRMSHYA 174

Query: 186 KVLAQRLATTDKYRDVLSPTVIDTYFKAAPLHDIGKVGIPDNILLKPGKLTPDEFTTMRN 245
           ++LA +L         L  T  +  + A+P+HDIGK+G PD +L KPGKL  +E+  M+ 
Sbjct: 175 RLLAIKLG--------LPSTFCELLYNASPMHDIGKIGTPDAVLKKPGKLDAEEWKIMQQ 226

Query: 246 HALLGKLALEKAEKLSGACTALINVAKEIAMGHHEKWDGSGYPLGLKGDDIPLSARLMAL 305
           HA++G      AE +      L+ +A+ IA+ HHEKWDG+GYP GL  ++IP+  R++A+
Sbjct: 227 HAVIG------AEIIGEHGDPLLQMARRIALTHHEKWDGTGYPNGLSEENIPIEGRIVAI 280

Query: 306 ADVYDALICRRVYKEPMSHEEAKAIILQGRGSHFDPMVIDAF 347
           ADV+DAL  +R YK+P + E    ++    G HFDP +++ F
Sbjct: 281 ADVFDALTSQRPYKQPWTIEATMELLENQAGQHFDPKLVEEF 322