Pairwise Alignments

Query, 379 a.a., two-component system response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., response regulator receiver protein (RefSeq) from Shewanella sp. ANA-3

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 20/184 (10%)

Query: 11  ILIVDDSPDNIAFMSQGLAQYYRIKAARSGKVALEIL-AQYPIDLVLLDIVMPEMSGYEV 69
           +L+VDD PDN+AFM+  L   Y++  A+ GK  L+I  +  P D+VLLD++MPEM G++V
Sbjct: 158 VLVVDDMPDNLAFMAGLLNDDYKVLFAKDGKAGLKICQSATPPDVVLLDVMMPEMDGHQV 217

Query: 70  INQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHTHLQNKR 129
           +  ++  P +  IPVIF++     E    G   GA+DY+ KPV   +LK ++   L   +
Sbjct: 218 LQALRTEPRSAEIPVIFVSALGEVEHHLQGLRGGAIDYLTKPVQPEILKLKLANVLAQVQ 277

Query: 130 SKDILLNQNDYLETEVLRRSGELDRMQDAVVFALASLAETRDPETGNHLLRTQHYVKVLA 189
            +  L  + D    E+LR               LA L +  D    + L      +  LA
Sbjct: 278 RQRALQQECD----ELLR---------------LAQLKDNADSIISHDLKNPLATISALA 318

Query: 190 QRLA 193
           Q+LA
Sbjct: 319 QKLA 322



 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 6   LSQCTILIVDDSPDNIAFMSQGLAQ--YYRIKAARSGKVALEILAQYPIDLVLLDIVMPE 63
           L+Q   LIV+D       M++ L Q  + ++  A  G+ AL++L +  IDL+LLD  MP+
Sbjct: 3   LTQMQCLIVEDMDALRKIMAEQLRQLGFGQVLQADCGRQALDMLQRMHIDLLLLDWSMPD 62

Query: 64  MSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHT 123
             G E++  ++     + +P+I +T  ++    ++  + G +D + KP +   L++RV  
Sbjct: 63  GHGQELLESLRQQDKWQDLPIIIVTANAHRSLVEVAMKYGVLDIIAKPFNSKTLQARVLQ 122

Query: 124 HLQNKRSK 131
            L  +  +
Sbjct: 123 ALTRRHKR 130