Pairwise Alignments

Query, 400 a.a., 2-methylaconitate cis-trans isomerase PrpF from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  573 bits (1477), Expect = e-168
 Identities = 288/388 (74%), Positives = 331/388 (85%), Gaps = 4/388 (1%)

Query: 6   PQIRIPATYMRGGTSKGVFFRLNDLPLEAQLPGAARDALLLRVIGSPDPYGKQIDGMGGA 65
           PQI++ ATYMRGGTSKGVFFRL DLP  AQ+PG ARDALLLRVIGSPDPY KQIDGMGGA
Sbjct: 8   PQIKVAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYAKQIDGMGGA 67

Query: 66  TSSTSKTVIVSASSRTDHDVDYLFGQVAIDKPFVDWSGNCGNLSAAVGPFAIHAGLIPAE 125
           TSSTSKTVI+S SS+ +HDVDYLFGQV+IDKPFVDWSGNCGNL+AAVG FAI  GLI A 
Sbjct: 68  TSSTSKTVILSHSSKANHDVDYLFGQVSIDKPFVDWSGNCGNLTAAVGAFAISNGLIDAA 127

Query: 126 CIPHNGVVAVKVWQVNISKTIVVHVPIVNGAVQECGEFELDGVTFAAAEVQVDFVDPADD 185
            IP NGV  V++WQ NI KTI+ HVPI +GAVQE G+FELDGVTF AAEVQ++F++PA D
Sbjct: 128 RIPRNGVCTVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQIEFMNPAAD 187

Query: 186 S----GAMFPTGNVMDDLQVPGIGTLNATFINSGIPTIFVDAEALGYQGTELQEAINSDP 241
                G MFPTGN++D L+VPGIG  NAT IN+GIPTIF++AE LGY GTELQ+ INSD 
Sbjct: 188 DDGEGGCMFPTGNLVDVLEVPGIGRFNATMINAGIPTIFINAEDLGYTGTELQDDINSDN 247

Query: 242 QALAKFETLRAYGALKMGLIERIEEAQNRQHTPKIAFVSGAKSYLASSGKRVEADSVDLL 301
            ALAKFET+RA+GAL+MGLI+ I+EA +RQHTPKIAFV+  KSY +SSGK V A+ VDLL
Sbjct: 248 AALAKFETIRAHGALRMGLIKHIDEAASRQHTPKIAFVAPPKSYASSSGKTVAAEDVDLL 307

Query: 302 VRALSMGKLHHAMMGTAAVAIASAAAVPGTLVNLAAGGGERTSVTFGHPSGTLKVGAKAK 361
           VRALSMGKLHHAMMGTAAVAI +AAA+PGTLVNLAAGGGE+ +V FGHPSGTL+VGA+A 
Sbjct: 308 VRALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTLRVGAQAV 367

Query: 362 QGKQGWQIERAIMSRSARILMEGWVRVP 389
           Q    W + +AIMSRSAR+LMEG+VRVP
Sbjct: 368 QENGEWTVIKAIMSRSARVLMEGFVRVP 395