Pairwise Alignments

Query, 1023 a.a., penicillin-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1035 a.a., Membrane carboxypeptidase (penicillin-binding protein) from Pseudomonas fluorescens FW300-N2E2

 Score = 1198 bits (3099), Expect = 0.0
 Identities = 599/1007 (59%), Positives = 766/1007 (76%), Gaps = 5/1007 (0%)

Query: 12   KKRRRAQKNKPRYWLIAVLLIGTAGGAALFHEMETSTLQSREISRYAAGLTYQVEPGASD 71
            +K+RRA+     +WL+ +L+I    G A+  EM TS  Q++EIS+YAA L+Y V+PG SD
Sbjct: 26   QKKRRARHGWRAFWLL-LLIIVVVVGLAVAKEMRTSRFQAQEISKYAASLSYSVQPGPSD 84

Query: 72   KIAFPSYGPFDQRLGYVALPNIQERLLQRGFTIRQQVRFSDELQRYAQYGLYVPYTEKVQ 131
             I +P  GPFD+RLGY +L     RLL+R + I+ Q RFS  L  Y + GL+VPY EK+Q
Sbjct: 85   AIIYPGAGPFDRRLGYSSLGEFLPRLLKRDYVIQAQARFSPALMDYVEKGLFVPYAEKIQ 144

Query: 132  AGLTLFDCRTEPVYQFRYPGNHYADFNAIPDLIVQSLLFIENRDLLSDKNPLVNPAVDWP 191
            AGLT+ DCR  PVYQF+YP   YA+F+AIP ++VQSLLFIENR LL  K PL NPAVDWP
Sbjct: 145  AGLTITDCRAAPVYQFKYPQQLYANFDAIPPVVVQSLLFIENRFLLDPKQPLANPAVDWP 204

Query: 192  RFFKAALTQVGKALDLDGQSAGGSTLATQVEKYRHSEDGLTYSPQEKIRQMVSASVRAYR 251
            RF  AA +QV K L L GQSAGGSTLATQ+EKYRHS +GLT S  EKIRQM+SASVRAY+
Sbjct: 205  RFAMAAWSQVAKLLSLPGQSAGGSTLATQLEKYRHSPEGLTVSGGEKIRQMISASVRAYQ 264

Query: 252  LGANTLEARKLVVWAYLNSVPLSAAPGYGEVHGLGDGLWVWFAADPERVNQLLDTRLNQS 311
             G  TLEAR+ ++  YLNSVPLSA PG+GEVHG+ +GL VW+ AD +R N+ L +  N  
Sbjct: 265  AGPQTLEARQRIIRDYLNSVPLSAVPGHGEVHGMAEGLRVWYGADFKRANERLSSAANDP 324

Query: 312  VNLAEQGLALRQVVALMIAHRRPSYYLAVSGRPDLNALTDSHIRLFYREKMISKSLMDAA 371
             +LAE+GLALR++++LMIA RRPS+YL+  G  +L  LTDSHIRL  +  +I  +L +AA
Sbjct: 325  KSLAEKGLALREMLSLMIAQRRPSHYLS-KGHEELARLTDSHIRLLAQNGVIDAALSEAA 383

Query: 372  LNATLQFRDFVRQPAVTRINTNKGLLAARTHLSRQLGVSLYDLDRMDLSASTTLNFELQS 431
            L + + +RD+V+ P V    TNKG+ AAR+ L+  L   LYDLDR+DLSA++TL  +LQ+
Sbjct: 384  LASQVSYRDWVQDPTVQPNETNKGISAARSRLATLLNRPLYDLDRLDLSATSTLQSDLQA 443

Query: 432  EVTRYLQKLANPEYAAQVGILGFRLLAAEKTADVRYSFTLFERTDEGFKVRVQTDNTNQP 491
            + T YL++LA+P +AA++G++G RLL    T  VRYSFTL E T +G +VRVQTD+T+QP
Sbjct: 444  QATEYLKRLADPAFAAEIGLMGERLLTPTSTTQVRYSFTLLELTPDGSRVRVQTDSTDQP 503

Query: 492  FDLNEGSKLELGSTAKLRVLTTYLEIIAKLHSKYHDLSVMELRRHLVEAQDTLSVWSLEW 551
            FD+NEGSKLELGSTAKLRVLTTYL+IIA+LH +Y + +   L++  +  QD LS W++++
Sbjct: 504  FDINEGSKLELGSTAKLRVLTTYLQIIAELHERYAEQTPAALKKADIAEQDRLSRWAVDY 563

Query: 552  LLTSPKRDLATMLEAALEREYSADPKERFFTGGGIHTFNNFRKEDDERIVTMRDALRESI 611
            L+ +  R L  MLEAAL+R YSA P E FFTGGG+HTF+NFR ED+ R  T+RDALRESI
Sbjct: 564  LIQNTDRSLPKMLEAALDRTYSASPGEAFFTGGGLHTFHNFRNEDNGRNPTLRDALRESI 623

Query: 612  NLPFVRLMKDIERYTLYS-EGYRAQLMKDDKDPRRMEYLRQFADKEGRAYLLRFWRKYKD 670
            NLPF+RLM+D+ RY  Y+     ++L+KDDKDPRR EYL QFAD+EG ++LLRFW+KY+ 
Sbjct: 624  NLPFIRLMRDLVRYATYAGPNNSSELLKDDKDPRRQEYLAQFADREGTSFLLRFWKKYQK 683

Query: 671  KTTDERMATLLEGLKPSADRLAAVHRYLLPEASVSEFVRFMDDKLPPITR-DKLTDKQLE 729
            K T +R+ T L+G++P+A RLAAVHRY  P  S   F  F+   L  +   +KLTD++LE
Sbjct: 684  KDTSQRLETFLDGMRPTAIRLAAVHRYFFPGDSQESFNLFVRSHLKSVKNPEKLTDERLE 743

Query: 730  KLYNKYGRGKYSLPDQGYIARVHPLELWLLGYLNEHHQASFSDVVAASSDKRQEVYSWLF 789
            +LY  YG G Y LPDQG+IA+VHPL+LWL+GYL  +  A FS +V AS  +RQEVYSWLF
Sbjct: 744  RLYQSYGPGAYDLPDQGFIAKVHPLDLWLMGYLLNNPDAKFSQIVKASEFERQEVYSWLF 803

Query: 790  KTRHRNARDSRVRTMLEVEAFTDIHQSWQRLGYPFDHLVPSLATALGSSGDRPAALSELM 849
            K+RH++ARDSR+RTMLE+EAF DIHQ WQ++GYPFDHLVPSLATA+GSSGDRPAAL+EL+
Sbjct: 804  KSRHKSARDSRIRTMLEIEAFLDIHQRWQKVGYPFDHLVPSLATAIGSSGDRPAALAELV 863

Query: 850  GIILNDGVRVPTKRINHLHFAQDTPFETEFTPVETQGVRVLPVEVARALRGALSQVVDSG 909
            G ILNDG+R P  R++ L FA DTP+ET        G RV+PVEVARALRGALSQVVD+G
Sbjct: 864  GTILNDGIRQPALRVDSLDFAVDTPYETRLVSNPDNGKRVMPVEVARALRGALSQVVDAG 923

Query: 910  TARRISGVFKLPDGTPIVLGGKTGTGDNRLQTVNRAGTVVQSLARNRTATFVFYLGDRHF 969
            TA+R++G FKL DGTP+ +GGKTGTGDNR++ +   G V+ S + NRTATFVFY+GD HF
Sbjct: 924  TAKRVAGSFKLADGTPLAMGGKTGTGDNRIEAIGSGGRVISSKSINRTATFVFYIGDSHF 983

Query: 970  GTLTAYVAGSDSEKFTFTSALPVQVLKGMAPILSPYLAP-NEQECRP 1015
            GTLTA+V G+ ++ F FTSALPVQVLKGMAP LSPYL P +  +C+P
Sbjct: 984  GTLTAFVPGASAQNFKFTSALPVQVLKGMAPFLSPYLQPGSHTQCKP 1030