Pairwise Alignments

Query, 1023 a.a., penicillin-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 1041 bits (2692), Expect = 0.0
 Identities = 532/1003 (53%), Positives = 714/1003 (71%), Gaps = 10/1003 (0%)

Query: 13   KRRRAQKNKPRYWLIAVLLIGTAGGAALFHEMETSTLQSREISRYAAGLTYQVEPGASDK 72
            KR+R  ++K R W +  +LI       +  E++TS  QS+ + +YA  LTY+++   +  
Sbjct: 25   KRQRKPRSKGRVWFLFFILI-ICVAILIGQEVKTSYFQSKYVHQYAQTLTYELKNQPTQS 83

Query: 73   IAFPSYGPFDQRLGYVALPNIQERLLQRGFTIRQQVRFSDELQRYAQYGLYVPYTEKVQA 132
            I +PSYGPFD+R GY  LP   +RLLQR F + QQV FS  LQ YAQ G + PY EK Q+
Sbjct: 84   IIYPSYGPFDERHGYSKLPQYIDRLLQRNFQVTQQVEFSPALQEYAQMGFFPPYHEKAQS 143

Query: 133  GLTLFDCRTEPVYQFRYPGNHYADFNAIPDLIVQSLLFIENRDLLSDKNPLVNPAVDWPR 192
            GL L DCR   +Y+F YP   Y D + IP+ IV +LLFIENR+L + + P +NP +DWPR
Sbjct: 144  GLALLDCRNTDLYEFAYPKRVYQDDDKIPNEIVNTLLFIENRELWTTE-PKLNPVIDWPR 202

Query: 193  FFKAALTQVGKALDLDGQSAGGSTLATQVEKYRHSEDGLTYSPQEKIRQMVSASVRAYRL 252
            F  A ++Q+ + + ++  +AGGSTLATQ+EK+RHS  GLT S ++K+ Q+ SA+VR Y+ 
Sbjct: 203  FIVAGMSQIAEMVGMNVSTAGGSTLATQIEKFRHSSQGLTLSIKDKLLQIGSATVRVYQQ 262

Query: 253  GANTLEARKLVVWAYLNSVPLSAAPGYGEVHGLGDGLWVWFAADPERVNQLLDTRLNQSV 312
            G  T  ARK ++  YLN+VPLS+AP +GEVHG+GDGLW WF  D +  N+LL +   ++ 
Sbjct: 263  GEITEPARKRIIQDYLNTVPLSSAPNHGEVHGIGDGLWAWFGTDFDTANKLLASPQIKA- 321

Query: 313  NLAEQGLALRQVVALMIAHRRPSYYLAVSGRPDLNALTDSHIRLFYREKMISKSLMDAAL 372
            N A++G   RQVVALMIA RRPSYYL + G  DL  L DSHIRL  +  +I + L DAAL
Sbjct: 322  NAAKRGQVFRQVVALMIAQRRPSYYL-LQGHEDLENLVDSHIRLLGQYYLIDRQLRDAAL 380

Query: 373  NATLQFRDFVRQPAVTRINTNKGLLAARTHLSRQLGVSLYDLDRMDLSASTTLNFELQSE 432
               LQF+   +    T+   +KG+   R   +  L V LYDLDR+DL+ +++L+ +LQ +
Sbjct: 381  AQKLQFK-VAKAQRNTQSGADKGVNTIRIRTAGMLNVGLYDLDRLDLTVNSSLHSDLQQQ 439

Query: 433  VTRYLQKLANPEYAAQVGILGFRLLAAEKTADVRYSFTLFERTDEGFKVRVQTDNTNQPF 492
            V+ YL+ L     A +VG+LG RLL   +  +V YSFTL+E+T+   +VRVQTD+T+QPF
Sbjct: 440  VSHYLRSLGQAATAEKVGLLGERLLEPSQLQNVLYSFTLYEKTETANRVRVQTDSTDQPF 499

Query: 493  DLNEGSKLELGSTAKLRVLTTYLEIIAKLHSKYHDLSVMELRRHLVEAQDTLSVWSLEWL 552
            D+NEGSKLELGSTAKLRVL TYLEIIA++H KY     +EL    +E +D L+ W++++L
Sbjct: 500  DINEGSKLELGSTAKLRVLATYLEIIAEIHDKYSKKHGIELESIEIEPRDHLTRWAIDYL 559

Query: 553  LTSPKRDLATMLEAALEREYSADPKERFFTGGGIHTFNNFRKEDDERIVTMRDALRESIN 612
            + +P R L  ML+AAL+REYSA P E+FFTGGG+H FNNF+K +D ++ TM +AL+ SIN
Sbjct: 560  IVNPDRRLDRMLDAALQREYSASPNEQFFTGGGLHVFNNFKKSEDFKVPTMYEALQNSIN 619

Query: 613  LPFVRLMKDIERYT--LYSEGYRAQLMKDDKDPRRMEYLRQFADKEGRAYLLRFWRKYKD 670
            LPFVRLM+DI  Y+  + +EG  A+L+++DKDPRR EYLR FAD+EG  ++ +F+RKYK 
Sbjct: 620  LPFVRLMRDIVNYSSSMQNEGNMARLLRNDKDPRREEYLRVFADREGNTFVNKFYRKYKK 679

Query: 671  KTTDERMATLLEGLKPSADRLAAVHRYLLPEASVSEFVRFMDDKLPPITRDKLTDKQLEK 730
               +ER+    +G   +  +L A +RYL P  SV+ F  F+  +LP   ++  TDK++++
Sbjct: 680  VAPNERLELFFDGQTQAEQQLTAAYRYLQPNESVASFKAFLQQRLP---QNNYTDKRIKE 736

Query: 731  LYNKYGRGKYSLPDQGYIARVHPLELWLLGYLNEHHQASFSDVVAASSDKRQEVYSWLFK 790
            LYNKYG  KY+LPDQGYIARVHPLELW+L YLN+H +A+ +DV  AS  +RQEVY WLF+
Sbjct: 737  LYNKYGPEKYNLPDQGYIARVHPLELWVLDYLNQHPEANLNDVKEASKYERQEVYRWLFR 796

Query: 791  TRHRNARDSRVRTMLEVEAFTDIHQSWQRLGYPFDHLVPSLATALGSSGDRPAALSELMG 850
            TRH+NARD RV+ MLEVEAF DIHQ W RLGYPF+ +VPSL +ALGSSGDRPAAL+ELMG
Sbjct: 797  TRHKNARDVRVQVMLEVEAFLDIHQRWARLGYPFESMVPSLGSALGSSGDRPAALAELMG 856

Query: 851  IILNDGVRVPTKRINHLHFAQDTPFETEFTPVETQGVRVLPVEVARALRGALSQVVDSGT 910
            II NDG R+PT RIN LHFA++TP+E       TQG RV+  EVA+AL+ AL+ VV +GT
Sbjct: 857  IIQNDGYRLPTVRINQLHFAEETPYEVRLENQNTQGERVMRHEVAQALKAALANVVQNGT 916

Query: 911  ARRISGVFKLPDGTPIVLGGKTGTGDNRLQTVNRAGTVVQSLARNRTATFVFYLGDRHFG 970
            ARR+ G+F   +G  + +GGKTGTGDNR+ T  + G  V + A NRTATFVFYLGD +FG
Sbjct: 917  ARRLKGIFTDDNGEMLAIGGKTGTGDNRIVTQMQQGRKVATTAMNRTATFVFYLGDNYFG 976

Query: 971  TLTAYVAGSDSEKFTFTSALPVQVLKGMAPILSPYLAPNEQEC 1013
            TLTA+V GS S+ F+FTSALP+QV+KGM PIL+PY+  ++  C
Sbjct: 977  TLTAFVPGSKSDDFSFTSALPLQVMKGMMPILAPYVKSSKGMC 1019