Pairwise Alignments

Query, 234 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  148 bits (374), Expect = 8e-41
 Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 6/227 (2%)

Query: 6   SLYIIEDDTKLREMLAEYMTNQGFQVTTFATGETAPEQILLNQPDLVLLDLMLPGENGLT 65
           ++ +++DD ++RE+L  Y++  GFQV     G      +     DLV+LD+MLP E+G +
Sbjct: 7   NILLVDDDQEIRELLQTYLSRSGFQVRGVPDGGEFRAALCAEPADLVILDVMLPDEDGFS 66

Query: 66  ICRQIRAQ---FLGKILMLTASDDDFDHVAALEMGADDFVNKPIKPRVLLARIRMLMRRE 122
           +CR IR         I+MLTAS D+ D V  LE+GADD++ KP  PR LLARI+ L+RR 
Sbjct: 67  LCRWIRQHERLASMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRRV 126

Query: 123 ERTSASADATHLLQFGGLLLNQ-SRRHCELDGEVINLSDSEFDLLWLLASAADQVVSREF 181
             + A    + +L F    L+  S R    DGE + LS ++F LL L      Q++ R+ 
Sbjct: 127 --SFAQERGSDVLAFDEWRLDMISHRLFHADGEEVFLSGADFALLKLFLDHPQQILDRDT 184

Query: 182 LTKSLRGIEYDGLDRTVDNKIVTLRKKLCDDSSTPKRIITVRGKGYL 228
           +  + RG E   L+R VD  +  LR++L D   +P+ I TVRG GYL
Sbjct: 185 IANATRGREVMPLERIVDMAVSRLRQRLRDTGKSPRLIRTVRGSGYL 231