Pairwise Alignments

Query, 234 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  175 bits (443), Expect = 8e-49
 Identities = 94/246 (38%), Positives = 149/246 (60%), Gaps = 14/246 (5%)

Query: 1   MSNQPSLYIIEDDTKLREMLAEYMTNQGFQVTTFATGETAPEQILLNQPDLVLLDLMLPG 60
           M +   + I++DD  L  ++A+++   G++      G  A E+I+  QP LV+LD+MLP 
Sbjct: 1   MKDNNWILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPD 60

Query: 61  ENGLTICRQIR-------AQFLGKILMLTASDDDFDHVAALEMGADDFVNKPIKPRVLLA 113
            +GL+ICR +R         + G ILMLTA ++D D VA LE GADD++ KP++ RVLLA
Sbjct: 61  MDGLSICRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLA 120

Query: 114 RIRMLMRR-------EERTSASADATHLLQFGGLLLNQSRRHCELDGEVINLSDSEFDLL 166
           R+R L+RR       E+ +   ++   L++F GL +++  +  +  G+ I L+ +EF+LL
Sbjct: 121 RVRALLRRKPEPPVTEKLSKLHSNNESLIEFDGLSIDKKYQRIQQHGQDIELTTAEFELL 180

Query: 167 WLLASAADQVVSREFLTKSLRGIEYDGLDRTVDNKIVTLRKKLCDDSSTPKRIITVRGKG 226
           WLLAS   ++  R+ ++     + Y+   RT+D ++  +R+KL DD S   RI T+ GKG
Sbjct: 181 WLLASRPGEICDRDSISDYFSDLGYESSHRTIDLRVSRIRRKLGDDPSHATRIKTIHGKG 240

Query: 227 YLFVPD 232
           YLFV D
Sbjct: 241 YLFVGD 246