Pairwise Alignments

Query, 440 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (336), Expect = 8e-36
 Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 28/323 (8%)

Query: 120 IYLLKPDSHSPVYQAIDRADNLL---FVFMLGGFALYCMFLIWFLSRRLRELERVTHDFA 176
           +Y   PD+H   +      + LL      +L G  L C  L W L + LR L++     A
Sbjct: 139 LYGRLPDTHPRPWFFFFIENKLLTLSLAILLSG--LLCALLAWHLGKPLRSLKKSADALA 196

Query: 177 NGNLQARA---STKSSKSVGKLNHSFNMMADKISHLILSNKALTNAIAHDLRTPIFRIQW 233
            G+L  R    +T+ +  +G+L  +FN MAD I  ++ + + L   I+H+LRTP+ R+Q 
Sbjct: 197 EGDLSNRVDKTTTQRNDEIGQLATAFNSMADSIEAMVKNQQRLMGDISHELRTPLTRLQL 256

Query: 234 QAEVLAESQLNAKQQQQVASIIEDTEEMETMVDELLYYAKLEHPESDIQ---------SQ 284
               LA ++   +Q  +   I  + E++E ++ ELL  ++++   ++ +         SQ
Sbjct: 257 S---LALARKKGQQTTETDRIAYEAEQLEQLIAELLELSRVKLSTNETKVCLGLAESLSQ 313

Query: 285 YLEVNQWLADFIDEQSHKSSLQIQYLPSLQPLMLDADPQLLTRALVNLIRNAEKYAGDRL 344
            L+  ++ AD   +Q  K ++ I      + + L   P+ L+RA+ NL+RNA +YA   +
Sbjct: 314 VLDDAEFEAD---QQGKKITIDID-----EAIELSHYPKSLSRAIENLLRNAIRYAKSDI 365

Query: 345 LIEASTVDAKLCIAIHDNGPGIEEQHWPHIFDAFYSTDSSRNKAQSGFGLGLAIVKQIMA 404
            + AS    ++ I I D+GPGI+      IF  FY  DS+R +   G+GLGLAI +  ++
Sbjct: 366 HLHASQTSGQVQITIKDDGPGIDPAELESIFKPFYRPDSARQRESGGWGLGLAITEAAIS 425

Query: 405 RHQGEVTLTKSPLGGACFSLWLP 427
            H+G++        G   ++ LP
Sbjct: 426 AHKGKIKAENREPHGLEVNISLP 448