Pairwise Alignments

Query, 257 a.a., outer membrane protein OmpV from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 56.6 bits (135), Expect = 6e-13
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 112 MDKRKATVDLGLNADIALGDGTVSTYFQHDILNENKGYKTGVNYFH-------IIDLGVA 164
           ++ R  T+  G  A I    G V   + HD+ N ++G +  + + +       + D+ + 
Sbjct: 159 LESRNFTLLGGAEAFIYTPLGVVRLAYTHDMFNVHQGAEAQIKWTYGWHLTRWVFDMSLV 218

Query: 165 DLVPFAGISYQSSDYNNYYFGVKDKEATAQRKAYHAGGDFSYNLGYKLVYPINDRWEITQ 224
                  + ++S++  +YY+GV+  E T   + YHA   +   +     Y + D W++  
Sbjct: 219 -------LDWKSTNVVDYYYGVRPSENTYWSQHYHADAGWDKGVEMTARYILTDNWDMLF 271

Query: 225 TSAYTRLGSDIAHSPIVDS--ANQWLVGATVAYHF 257
              YT++  +IA SP++D   ++ + +GA  AY F
Sbjct: 272 AFRYTQIADEIAASPLLDQDYSSTYFIGA--AYRF 304