Pairwise Alignments

Query, 449 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 15/177 (8%)

Query: 275 IVKSVKQLGRADIRLDE--EVDLNSTINRALALLQSDLRRVSVRMRPGSLP--IIKGSQT 330
           IV+S+     A  R  +   V L      A+ LL  +  R  V+      P  + +G   
Sbjct: 809 IVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQFINLCHPDHVAEGDPQ 868

Query: 331 EWVQVWINLIKNACDAMAQTTEPTIDIQTRCSRQRLYVTVANNGPEIDEATRRKIFQPSF 390
              QV INL+ NA DA  Q     I I +  + Q +Y+ V + G  I +  + ++F+P F
Sbjct: 869 RLAQVLINLLSNARDASPQGG--VIRISSEVAEQTVYLVVEDEGSGIPKDIQDRLFEPFF 926

Query: 391 TTKKEGLSFGLGLGLAIVKRIVSGYGGTVAVKSDQDK-----TIFRIKLP--VEGYH 440
           TTK  G   G GLGLA+V  I+  + G + + S  D      T FRI LP  VE  H
Sbjct: 927 TTKDPG--EGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGTRFRITLPRHVEASH 981



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 141 ERLYSAEQMTTLGQLAAGIAHELNNAIGVVSSKTERL 177
           +RL  +E++ ++G+LAAG+AHE+ N I  ++   + L
Sbjct: 746 DRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNL 782