Pairwise Alignments

Query, 449 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 95/339 (28%), Positives = 156/339 (46%), Gaps = 43/339 (12%)

Query: 101 VQDVEQYGSLSTQFMPVIVAELSQRQRRATQEAVAKERALERLYSAEQMTTLGQLAAGIA 160
           VQDV +  S   Q    +  +L Q     +      E A  +L  +E+M  +GQLAAG+A
Sbjct: 124 VQDVTELASYY-QAQKCLSEQLEQEHTALSLLNKKLEAAQNQLLQSEKMVAIGQLAAGVA 182

Query: 161 HELNNAIGVVSSKTERLEALFMELLEEVHPEASQFFDFGLLFGQKVSSSEARERGAVFEK 220
           HE+NN IG V+S  + L+    +LL+ ++            F QK++     + G+V   
Sbjct: 183 HEINNPIGFVNSNLQSLQDYNNKLLKLLN------------FYQKLT----HKIGSV--P 224

Query: 221 QYQLPKDIARELARAVPANELSAHWLKNPHLAIRYWQMGRDLHDLRLAAKHSVGIVKSVK 280
            + L +D+ +        ++L       P L IR    G D    R+A      IVKS+K
Sbjct: 225 YFTLEQDMLKRYQFEFICSDL-------PDL-IRESIEGLD----RVAV-----IVKSLK 267

Query: 281 QLGRADIRLDEEVDLNSTINRALALLQSDLRRVSVRMR--PGSLPIIKGSQTEWVQVWIN 338
                D    +  ++   I   L +  + ++  +V +R    +LP +     +  QV++N
Sbjct: 268 SFSHVDSSEWQYANVIEGIENTLKIAANQIKYKAVVLRNFQDNLPELYCQPMQLNQVFLN 327

Query: 339 LIKNACDAMAQTTEPTIDIQTRCSRQRLYVTVANNGPEIDEATRRKIFQPSFTTKKEGLS 398
           L+ NA  A+ +  E +ID+    S     + + + G  I  +  RKIF+P +TTK  G  
Sbjct: 328 LLVNAAQAIEERGEISIDVSA--SDAEFIIVIRDTGSGIAASDLRKIFEPFYTTKLVGT- 384

Query: 399 FGLGLGLAIVKRIVSGYGGTVAVKSD-QDKTIFRIKLPV 436
            G GLGL++   IV  + G + V S   + T F + LP+
Sbjct: 385 -GTGLGLSLSYSIVQKHKGEIKVSSVLGEGTAFTVILPI 422