Pairwise Alignments

Query, 449 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 19/218 (8%)

Query: 243 AHWLKNPHLAIRYWQMGRDLHDLRLAAKHSVGIVKSVKQLGRADIRLD------------ 290
           AH LK P   IRY   G         A+ +  + K + Q+ RA   +             
Sbjct: 382 AHELKQPLAGIRYLTQGCLYRLDNTQAELATALNKVISQVDRAQTTIHRLRTFCQQTSDY 441

Query: 291 EEVDLNSTINRALALLQSDLRRV--SVRMRPGSLPIIKGSQTEWVQVWINLIKNACDAMA 348
           +  DL + I   L L+Q + +R+  S ++   +LP+   +     QV +NL++NA DAM 
Sbjct: 442 QSCDLRTVIEETLTLMQPEFQRLKLSPKVNLQALPVFADASL-MQQVLVNLLRNALDAME 500

Query: 349 QTTEPTIDIQTRCSRQRLYVTVANNGPEIDEATRRKIFQPSFTTKKEGLSFGLGLGLAIV 408
              + ++ I T  + + +Y+ + + G  + ++  +++F P  T+K +    GLGLG+ I 
Sbjct: 501 SIPQKSLFIDTGITGENVYIHITDAGCGLSDSALKRLFFPFETSKPQ----GLGLGMVIC 556

Query: 409 KRIVSGYGGTVAVKSDQDKTIFRIKLPVEGYHGETEHH 446
           KRI+  + G +           ++ LPV    G  E +
Sbjct: 557 KRIIEEHKGKIEAHHANPGLTIKVTLPVNSQPGLGEQN 594



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 130 TQEAVAKERALERLYSAEQMTTLGQLAAGIAHELNNAIGVVSSKTE----RLEALFMELL 185
           TQ+ + +++  ++ Y A+++   G++A+GIAHEL   +  +   T+    RL+    EL 
Sbjct: 354 TQKILLEQQ--QQFYRAQRVLLTGEMASGIAHELKQPLAGIRYLTQGCLYRLDNTQAELA 411

Query: 186 EEVHPEASQ 194
             ++   SQ
Sbjct: 412 TALNKVISQ 420