Pairwise Alignments

Query, 487 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., Na+/dicarboxylate or sulfate symporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  479 bits (1233), Expect = e-140
 Identities = 244/466 (52%), Positives = 336/466 (72%), Gaps = 5/466 (1%)

Query: 22  LKYIIPLLIPMLVLMLPATAFPFEGLTVIQQRVIAIFLLAALLWVFEPIPIYSTSVVIIV 81
           +K  I + + +++  LP   F  EGLTVI+QR+I+IF+ A L+WVFE +P ++TSV+I+V
Sbjct: 33  IKLTIAITLSLILWFLPIDTFGIEGLTVIEQRLISIFIFATLMWVFEAVPAWTTSVLIVV 92

Query: 82  LEVLMLSDKGFILFRLGEGTSEFGALLKSTEIMATFANPIIMLFLGGFFLAMAATKYRLD 141
           L +L +SD             E G  +K   I+  FA+PIIMLF+GGF LA+AATK  LD
Sbjct: 93  LLLLTVSDSSLWFLTQNTPAEELGQTVKYKSILHCFADPIIMLFIGGFILAIAATKSGLD 152

Query: 142 VNLARVLLKPFGNNPKYVMLGLMMITAVFSMFMSNTATTAMMLSILTPVIAVFGPKDPGR 201
           V LARV+L+PFG   +YV+LG +++TAVFSMF+SNTAT AMML+ LTPV+        G+
Sbjct: 153 VLLARVMLRPFGTQSRYVLLGFILVTAVFSMFLSNTATAAMMLTFLTPVLKALPADGKGK 212

Query: 202 VAFALCIPVAANIGGIGTPIGTPPNAIALKYL---VGDNL-ITFAEWMAFGIPFVVILMA 257
           +  A+ IPVAAN+GG+GTPIGTPPNAIALKYL    G NL I F EWM+F +P+ +I++ 
Sbjct: 213 IGLAMAIPVAANVGGMGTPIGTPPNAIALKYLNDPEGLNLNIGFGEWMSFMLPYTIIVLF 272

Query: 258 LAWLLIEFMYRAEQKTIELTIKGKFLKTPKAIIVYITFASTILLWMLGSLHGMNSYSVAL 317
           +AW ++  ++  +QK+IEL I+G+  K  ++I+VYITFA T+LLWM     G+NS  VA+
Sbjct: 273 IAWFILLRLFPFKQKSIELQIEGEAKKDWRSIVVYITFAITVLLWMFDKFTGVNSNVVAM 332

Query: 318 IPVAVFSVTGIIGKEDLKMISWDVLWLVSGGIALGLALDKTGLAELVVHSIPFDQYSPYV 377
           IPVAVF +TG+I K DL+ ISW VLW+V+GG ALG+AL +TGLA+ ++ +IPF  + P +
Sbjct: 333 IPVAVFCITGVITKRDLEEISWSVLWMVAGGFALGVALQETGLAKHMIEAIPFSTWPPVL 392

Query: 378 VILGAAILCLLMANFMSHTATANLLMPIMAALGASMTP-LNPLGGEVTLILVVTFAASLG 436
           +I+G+ ++C  MANF+SHTATA LL+PI+A  G SM   L+ LGG  TL++ V   +SL 
Sbjct: 393 MIVGSGLICYAMANFISHTATAALLVPILAIAGISMRENLSSLGGVETLLIGVAIGSSLA 452

Query: 437 MSLPISTPPNALAHATRNVQSQQMAKVGIILGIFGVLMSFVMVWIL 482
           M LPISTPPNALAHAT  +Q + M KVGII+GI G+++ + M+ IL
Sbjct: 453 MILPISTPPNALAHATGMIQQKDMEKVGIIMGIIGLILGYTMLIIL 498