Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  254 bits (649), Expect = 6e-72
 Identities = 179/549 (32%), Positives = 283/549 (51%), Gaps = 15/549 (2%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60
           M L+ L+I  + A  F++IAV+     ++ + ++  I+   +      LP++   D I++
Sbjct: 1   MVLRQLNIAPRAALGFALIAVLVALLGVFALGQMSSIRDSEVAVETQWLPSIRGGDEIRE 60

Query: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120
            M   R     +   +D   I     + +    E+++ + AY K V   E +  + +   
Sbjct: 61  WMLRIRTISLRMALDQDPKNIAVYRGQMDTRDKELSEKIAAYEKLVVTPEGKALYDQFKQ 120

Query: 121 NWNAY-TAVTDQFNQTLLTQGADDAYP--ILANSLSTFEALESDFTLLIGILHQ--AMDS 175
            + AY T +   F  TL  QG  D     +L +  +  +        L  +  +  +++S
Sbjct: 121 TFAAYRTGIAQSF--TLAEQGRRDELIKLLLVDMKTVVDGSGKQLNDLAELFSKQVSIES 178

Query: 176 NKVQILSSVKTLNSTSVASNIAILAIM--VLMTWLLTRLICGPLAIVMKQSNAIAKGDLS 233
            K    S     NS  V S   + A +  V +  LLTR I  PL   +  +  +A+GDL+
Sbjct: 179 QK----SQEHYANSRMVVSLFVVFAALATVALAMLLTRSIVKPLGEALNAAENVARGDLT 234

Query: 234 QTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMK 293
           + ++    GNDE+  L  A   MQQNLR+ +  I  +  QL++A +E+  ++  S   ++
Sbjct: 235 RPIETH--GNDEVSRLLKALAAMQQNLRETLQGISGSAAQLATAADELNAVTLDSTQSLQ 292

Query: 294 EQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVAD 353
           +Q  +I Q ATA+ +M  AV +VARN   ++     ++  +  G +  +  V +I  +A 
Sbjct: 293 QQNNEIEQAATAVTEMTTAVEEVARNAVSTSDATRQSSESASLGQQRVSDTVDAIGALAS 352

Query: 354 IIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADE 413
            +   G  V  L  QS  I  V+DVIR+IA+QTNLLALNAAIEAARAGESGRGFAVVADE
Sbjct: 353 DVQVTGGLVQSLANQSQDIGKVLDVIRAIAEQTNLLALNAAIEAARAGESGRGFAVVADE 412

Query: 414 VRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEES 473
           VR LA RTQ ST EI  +++ ++  A QA D+ + S S     +     +   + +I  S
Sbjct: 413 VRALAYRTQQSTQEIEQMVQGMRSGATQALDSMQASSSRAASTLAMAERAGDALQTITAS 472

Query: 474 IANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSL 533
           +  I +    IASA  EQ  VA E+ RN+ NI   S   A G+ QT+ +  EL+QLA SL
Sbjct: 473 VNEIHERNLVIASAAEEQAQVAREVDRNLVNIRDLSVRSASGADQTSASSHELSQLANSL 532

Query: 534 QDTLRRFKI 542
           +  ++RF++
Sbjct: 533 RTMVQRFQV 541