Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  240 bits (613), Expect = 9e-68
 Identities = 164/543 (30%), Positives = 271/543 (49%), Gaps = 3/543 (0%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60
           M L++L+I  +    F+VIA++ +   ++  + +  I+   L      +P++  +  + +
Sbjct: 1   MSLRSLNIAPRAFLGFAVIALLVVILGVFAANRMSVIRQASLEMEQTQVPSVGYLANVLE 60

Query: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120
            +   R   F +L  +D A + +   R   +  ++N +  +Y       +E + +K    
Sbjct: 61  NVLRMRILSFRILVNRDPASLTEAESRIGVLVEKLNKANSSYAALPSTPQEAELYKVFSA 120

Query: 121 NWNAYTAVTDQFNQTLLTQGADDAYPILANSLST-FEALESDFTLLIGILHQAMDSNKVQ 179
               Y     +         AD+    +   +    + +      LI I       +  +
Sbjct: 121 TLEKYLQAQKEMLDLSRQNKADELRTHINTRIKEGTDLMGEQLNKLIAINVAGASESSAK 180

Query: 180 ILSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRS 239
                 +  +  +  +I+     V++  LLTR I  PL   ++ +  IA G+L Q +  +
Sbjct: 181 AGEHYDSAITGIIIVSISAALATVVLALLLTRSIVAPLNRALEAARTIASGNLVQVI--A 238

Query: 240 SIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQI 299
             G DE G L  A   MQ +LRQ I++I  + TQL +A +E++ ++ +S+ G+++Q  +I
Sbjct: 239 DDGKDEPGRLLQALATMQVSLRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEI 298

Query: 300 TQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAG 359
            Q ATA+ +M AAV +VARN   ++  +  +   +QEG       V +IQ +   +    
Sbjct: 299 EQAATAVNEMTAAVEEVARNAVSTSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATA 358

Query: 360 QTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAG 419
             +  L  Q   I  V+DVIR+IA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA 
Sbjct: 359 SMIEGLAVQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAH 418

Query: 420 RTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIAD 479
           RT  ST EI  ++  +Q    QA  + ++S       +E    +   +  I +SI  I +
Sbjct: 419 RTAQSTQEIEKMVAGIQNGTGQAVQSMQQSNQRTQSTLEMARAAGVALEQITQSIHQINE 478

Query: 480 VGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRR 539
               IASA  EQ  V+ E+ RN+ NI   + + A G++QT+ A  EL++LAV L   + R
Sbjct: 479 RNLVIASASEEQAQVSREVDRNLVNIRDLATQSASGAKQTSDATHELSRLAVGLNAMVAR 538

Query: 540 FKI 542
           F I
Sbjct: 539 FVI 541