Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  250 bits (639), Expect = 1e-70
 Identities = 157/435 (36%), Positives = 248/435 (57%), Gaps = 14/435 (3%)

Query: 108 PGEEEQTFKRLMGNWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIG 167
           P E     ++   + N Y A   QF  + +            N+ +     E    L+  
Sbjct: 214 PEEHAVNLQQANDSINVYRAAVSQFRDSQID-----------NAAALKRMAEQGDVLIDA 262

Query: 168 ILHQAMDSNKVQILSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAI 227
                +    V+ L + K       A+ +A+L   V+   ++TR I GPL   +K +  +
Sbjct: 263 SQKLTVSQTAVRDLDAAKAKTFLVSAAVLALL-FGVIAALVITRQIVGPLGQTLKIAERV 321

Query: 228 AKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQ 287
           A GDL+  +  +S   DELG L  A + M   LRQLI  I   VTQ++SA E+++ ++ Q
Sbjct: 322 AAGDLTHNL--TSERRDELGQLQRAMQNMTVGLRQLIGGISEGVTQIASAAEQLSAVTVQ 379

Query: 288 SADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRS 347
           ++ G+  Q+ +  QVATAM +M A V +VA N E+++  A+AA+ +++EG +     +  
Sbjct: 380 TSAGVNSQKAETDQVATAMHEMTATVQEVASNAEEASEAAVAADAQAREGDKVVGEAIAQ 439

Query: 348 IQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGF 407
           I+++A  +G +   + EL+++S +I  V+DVI+S+A QTNLLALNAAIEAARAGE+GRGF
Sbjct: 440 IERLALEVGNSTTAMGELKRESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGF 499

Query: 408 AVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLM 467
           AVVADEVR+LA RTQ ST EI  +I  LQ   +Q     + SRS  D  VE    + + +
Sbjct: 500 AVVADEVRSLAQRTQKSTEEIEELILGLQSGTEQVAATLDNSRSLTDSSVELTRRAGASL 559

Query: 468 ISIEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELT 527
            +I  +++ I  +  QIA+A  +Q +VA+E++R+V N+   S++ A  S++TA +  EL 
Sbjct: 560 ENITRTVSAIQAMNQQIAAAAEQQSAVAEEINRSVLNVRDVSEQTASSSEETAASSAELA 619

Query: 528 QLAVSLQDTLRRFKI 542
           +L V LQ  + RF++
Sbjct: 620 RLGVHLQTLVGRFRV 634



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 65/343 (18%), Positives = 132/343 (38%), Gaps = 53/343 (15%)

Query: 243 NDELGTLANASEQMQQNLRQ-----LIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQY 297
           ND +G L    +  +Q + Q     LID+ ++AV +   A  EMT+ +    D   +   
Sbjct: 79  NDLIGKLDAGLKTARQQIEQPADAALIDKQLAAVAEYKKAFAEMTRATASREDARSKLGA 138

Query: 298 QITQVATAMAQMKAAVA---DVAR-NTEDSASQAMAANHKSQEG---ARENASMVRSIQQ 350
                   +A+++ ++     VA+ N   + S+A+        G   + +N +   +++ 
Sbjct: 139 SADNAVARVAEVEKSLLQGDSVAQFNNAVTLSKAIQQARYQVRGYTYSGKNEAQQPALEA 198

Query: 351 VADIIGEAGQTVSELEQQSS----QINVVVDVIRSIADQTNLLALNAAIEAARAGESGRG 406
           + +++    +   +L ++ +    Q N  ++V R+   Q     ++ A    R  E G  
Sbjct: 199 IDNVLKLLARLPEQLPEEHAVNLQQANDSINVYRAAVSQFRDSQIDNAAALKRMAEQGDV 258

Query: 407 FAVVADE--VRTLAGRTQDST----------------GEITTIIEKLQVMAK-------- 440
               + +  V   A R  D+                 G I  ++   Q++          
Sbjct: 259 LIDASQKLTVSQTAVRDLDAAKAKTFLVSAAVLALLFGVIAALVITRQIVGPLGQTLKIA 318

Query: 441 ---QAKDATERSRSS-IDKCVEQGNHSQSLMISIEESIANIADVGTQIASACSEQDSVAD 496
               A D T    S   D+  +     Q++ + + + I  I++  TQIASA  +  +V  
Sbjct: 319 ERVAAGDLTHNLTSERRDELGQLQRAMQNMTVGLRQLIGGISEGVTQIASAAEQLSAVTV 378

Query: 497 ELSRNV-------ENIHLASQEVAQGSQQTAQACRELTQLAVS 532
           + S  V       + +  A  E+    Q+ A    E ++ AV+
Sbjct: 379 QTSAGVNSQKAETDQVATAMHEMTATVQEVASNAEEASEAAVA 421