Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  248 bits (633), Expect = 4e-70
 Identities = 169/544 (31%), Positives = 284/544 (52%), Gaps = 15/544 (2%)

Query: 6   LSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKMSYW 65
           ++I  +    F++I  + L   ++ ++++ KI++   N   +++P+++ ++         
Sbjct: 1   MNIAPRAFLGFALIGALMLALGVFALTQMSKIRTSGENIAQNSVPSIKALNEFTQLTLRL 60

Query: 66  RRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMGNWNAY 125
           R   + +L  ++    ++T +   +   +I  +   Y K +   +E   + +L+     Y
Sbjct: 61  RVLSYRLLVNREPDIQQKTYDLVEQRSQQIRAAQTTYEKLISASDERAAYDQLVQLLGQY 120

Query: 126 TAVTDQFNQTLLTQGADDAYPILANS--LSTFEALESDFTLLIGILH---QAMDSNKVQI 180
             + ++  +TL      D    L N+  LS  +A+ +    L+ I +   +A++    Q 
Sbjct: 121 RQLEERM-KTLSRNNQVDELRALLNTELLSNSDAINAAIDRLVEINNLQAEALNKGAAQQ 179

Query: 181 LSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQ--TMDR 238
            SS      T +   +    + +L  WLLT  I  P+A  +  +  IAKG+L++  T+D 
Sbjct: 180 YSSAFNWVVTLL---LIATGLTLLFAWLLTNSITKPIANALDAAEEIAKGNLTRPITVD- 235

Query: 239 SSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQ 298
              G+DE G L  A   MQ+ LR  +  I  + TQL+SA EE+  ++++SA G+ +Q  +
Sbjct: 236 ---GSDEAGRLLRAMSTMQEKLRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNE 292

Query: 299 ITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEA 358
           I Q ATA+ +M +AV +VARN   ++  +  A   + +G       V +I++++  +   
Sbjct: 293 IEQAATAVNEMTSAVEEVARNAVSTSEASKNATTSAGDGRDLVQETVSAIERMSADVQST 352

Query: 359 GQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLA 418
              +  L  +S  I  V+DVIR +ADQTNLLALNAAIEAARAGE+GRGFAVVADEVR LA
Sbjct: 353 AALIGNLADESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALA 412

Query: 419 GRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIA 478
            RTQ ST EI  +I  +Q   + A D+   S    +  +     +   + +I  +I  I 
Sbjct: 413 HRTQQSTSEIERMIGSIQSGTEHAVDSMRNSTERAESTLNIARGAGMSLDTINTAIVEIN 472

Query: 479 DVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLR 538
           +    IASA  EQ  VA E+ RN+ NI   S + A G+ QT+ A  EL++LAV L + + 
Sbjct: 473 ERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGANQTSAASAELSRLAVDLNNMVG 532

Query: 539 RFKI 542
           RF +
Sbjct: 533 RFSL 536