Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  213 bits (543), Expect = 1e-59
 Identities = 132/341 (38%), Positives = 197/341 (57%), Gaps = 4/341 (1%)

Query: 203 VLMTWLLTRLICGPLAIVMKQSNAIAKG--DLSQTMDRSSIGNDELGTLANASEQMQQNL 260
           +L+  +L  ++  P+  ++ +   IA+G  DL   ++  S   DELG L +A  +    L
Sbjct: 205 ILVLVVLPLVVLSPMRRLLHRVEQIAEGGGDLKGRLEVRSA--DELGQLGSAFNRFLDKL 262

Query: 261 RQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVADVARNT 320
           + LI E+     ++ SA   M  ++  +   +  +   + QV+TA  QM AAV +VA N 
Sbjct: 263 QPLIAEVGRVTGEVDSAARAMADMAATNDRLISSEHAALDQVSTAATQMSAAVHEVAHNA 322

Query: 321 EDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIR 380
            +++  A  A+ +S++GA   +S + SI+Q+A  +  A  T+  L Q++S I  V++VIR
Sbjct: 323 ANASGAAQQASSQSRDGAEVVSSTIESIRQLAQEVESASGTIEALAQETSSIGAVLEVIR 382

Query: 381 SIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAK 440
            IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQDST +I   IE+LQ    
Sbjct: 383 GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTKDIQVRIERLQSGVA 442

Query: 441 QAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASACSEQDSVADELSR 500
           +A  A     +     VE+      ++     SI  I D+  QIASAC EQ SV +E++R
Sbjct: 443 KAVQAMHVGSTKARDSVERAAGVDQVLSGTGGSIQQINDMAAQIASACEEQSSVTEEIAR 502

Query: 501 NVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFK 541
           N+ +I   S E A  S Q+  A ++L+ L+ +L +   RF+
Sbjct: 503 NISDIRDLSNEAAANSAQSMHASQQLSSLSRNLAELTGRFR 543



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 67/371 (18%), Positives = 139/371 (37%), Gaps = 41/371 (11%)

Query: 196 IAILAIM-VLMTWL--------------LTRLICGPLAIVMKQSNAIAKGDLSQTMDRSS 240
           IA LA++ VLM W               LT+     +++++     + +  +++      
Sbjct: 18  IAFLAVLLVLMGWAGMRGIGQVTESSTQLTKRYLPAISLLLNADRDLYQAFVAERSLLDG 77

Query: 241 IGNDELGTLANASEQMQQNLRQLIDEIIS-AVTQLSSAVEEMTQISNQSADGMKEQQYQI 299
             N+ L  L+ +  +   N +Q  D +   A  Q  +  + +    N S     +   ++
Sbjct: 78  HANEHLKALSTSHGE---NAKQAYDRVQKYAAMQPGAEAQALVSQFNDSFGKWMQVSRRV 134

Query: 300 TQVATAMAQMKAAVA--------DVARNTEDSASQAM-AANHKSQEGARENASMVRSIQQ 350
            +++    Q  +A++        +  R++ D   +   AA+H+  + A EN   V   Q 
Sbjct: 135 LELSVGDPQGASALSFGDSERLFETMRDSIDKLGELEDAASHREGDAAIENGETVGVHQG 194

Query: 351 VADIIGEAG-------QTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGES 403
           V  ++G  G         +  L      ++ V  +     D    L + +A E    G+ 
Sbjct: 195 VILLVGLLGCILVLVVLPLVVLSPMRRLLHRVEQIAEGGGDLKGRLEVRSADE---LGQL 251

Query: 404 GRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHS 463
           G  F    D+++ L       TGE+ +    +  MA           +++D+        
Sbjct: 252 GSAFNRFLDKLQPLIAEVGRVTGEVDSAARAMADMAATNDRLISSEHAALDQVSTAATQM 311

Query: 464 QSLMISIEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQAC 523
            + +  +  + AN +    Q   A S+    A+ +S  +E+I   +QEV   S       
Sbjct: 312 SAAVHEVAHNAANASGAAQQ---ASSQSRDGAEVVSSTIESIRQLAQEVESASGTIEALA 368

Query: 524 RELTQLAVSLQ 534
           +E + +   L+
Sbjct: 369 QETSSIGAVLE 379