Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  203 bits (517), Expect = 1e-56
 Identities = 118/292 (40%), Positives = 167/292 (57%)

Query: 249 LANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQ 308
           L  A    Q +L+  +  +     QL    ++   ++   A+G+ +Q  +  QVATA+ +
Sbjct: 229 LEMAMLSQQAHLKTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINE 288

Query: 309 MKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQ 368
           M A   +VA N   +A     A+  +  G    A   ++IQQ+AD +   G+ V++L   
Sbjct: 289 MAATTQEVASNVALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLAND 348

Query: 369 SSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEI 428
           S  I  VVDVI+SIADQTNLLALNAAIEAARAG+SGRGFAVVADEVR LA RT ++TGEI
Sbjct: 349 SDAIGGVVDVIKSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEI 408

Query: 429 TTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASAC 488
             +IEKLQ+ A+ A   TE  R    + V+Q   +   +  I E++ NI D+ TQIASA 
Sbjct: 409 HQLIEKLQLQARHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASAT 468

Query: 489 SEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRF 540
            EQ +VADE+S NV  I   + + +  ++ +A    +L   A      + RF
Sbjct: 469 EEQSAVADEISNNVSTIARLADQTSGDARSSALLSEDLAATAEGQYALVERF 520



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 17/84 (20%), Positives = 35/84 (41%)

Query: 244 DELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVA 303
           DE+  LA  + +    + QLI+++           EE    + +  D + +    +T + 
Sbjct: 392 DEVRQLAQRTAEATGEIHQLIEKLQLQARHAVQTTEEGRVQATRGVDQVAQADQALTGIN 451

Query: 304 TAMAQMKAAVADVARNTEDSASQA 327
            AM  +      +A  TE+ ++ A
Sbjct: 452 EAMGNIIDMTTQIASATEEQSAVA 475