Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  235 bits (600), Expect = 3e-66
 Identities = 186/555 (33%), Positives = 283/555 (50%), Gaps = 27/555 (4%)

Query: 3   LKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKM 62
           L+      K+ ++F + A+I+L      +  + ++ + L     + L ++ N +      
Sbjct: 28  LRQSKFSTKLLSAFIICALITLAVGALGMVGVTRLANALELTFSNNLVSVSNTNEALTSF 87

Query: 63  SYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVA-------YGKTVWPGEEEQTF 115
           +   R  + +L  +D   + +T +  +RV+  ++D L         Y  T    +E    
Sbjct: 88  TAHNRGLYRLLDAQDGG-VSETDK--DRVRQALSDDLARAQKVFAIYRATPLEDDERAAG 144

Query: 116 KRLMGNWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDS 175
            +L     AY + + Q    L+  G  +A     NSLS+       FT +   +   +DS
Sbjct: 145 DQLELMLPAYISGSQQVVD-LMKAGNYEAARTQLNSLSS-----ESFTKVRSYMRVMIDS 198

Query: 176 NKVQILSSVKTLNSTSVASNIAILAIMVLMTWL--------LTRLICGPLAIVMKQSNAI 227
           N  QI            AS++ +L I V++ +L        +TR+I  PLA+ +  +  I
Sbjct: 199 NNRQIKEGAAAAADLK-ASSVLMLEIGVVIAFLVAIMLGVLITRMITRPLAVAVASAQRI 257

Query: 228 AKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQ 287
           A GDL+Q +  +S   DE G L NA   MQ  L+  I +I SA  QL+SA EE++ ++++
Sbjct: 258 AGGDLTQPIVSTS--GDEAGQLLNALSDMQGGLKNTIQQIASASDQLASAAEELSAVTDE 315

Query: 288 SADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRS 347
           S  G+  Q  +I Q ATA+ QM AAV +VARN   ++  + +A   + +G  +    V+ 
Sbjct: 316 STRGLTRQNDEIQQAATAVNQMTAAVEEVARNAVSTSEASKSATDDAVDGRGQVDHTVKG 375

Query: 348 IQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGF 407
           I  +   I  +   VSEL     +I+ V+DVIRSIA+QTNLLALNAAIEAARAGE GRGF
Sbjct: 376 ITTMVHEITASTGAVSELAGHVREISKVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGF 435

Query: 408 AVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLM 467
           AVVADEVR LA RTQ ST EI  +I  +Q  A  A  A  +S S      E    + + +
Sbjct: 436 AVVADEVRALAHRTQASTVEIEGMISTVQSGADGAVAAMGKSLSLATNTQELALRAGAAL 495

Query: 468 ISIEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELT 527
             I   +A I +    IASA  EQ  VA E+ RN+ NI   S + A G+ QT+ + +EL+
Sbjct: 496 EKITLGVATINERNLVIASASEEQAQVAREVDRNLINIQDLSTQSAAGANQTSASSQELS 555

Query: 528 QLAVSLQDTLRRFKI 542
           +LA S    +  FK+
Sbjct: 556 RLATSFNSLVANFKL 570