Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  245 bits (626), Expect = 3e-69
 Identities = 171/544 (31%), Positives = 276/544 (50%), Gaps = 8/544 (1%)

Query: 3   LKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKM 62
           L+ L I  + +A F+++ V+  G  I+ I +L  I+ + L   +D LP +   D I   +
Sbjct: 2   LRQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALAV 61

Query: 63  SYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMGNW 122
              R T   +L   D AQ+          +A    ++ AY   +   +E    + L   +
Sbjct: 62  EKTRTTVAKMLAAHDMAQVTLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKSTY 121

Query: 123 NAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNKVQILS 182
             Y    ++   TL+ +   +A   L       + +       +G L +  D ++ +  +
Sbjct: 122 QGYIERAEKV-YTLINENQAEAGRALV--WGEMKVMAEGMETALGKLEKINDDSEAESSA 178

Query: 183 SVKTL--NSTSVASNIAILAIM--VLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDR 238
           +  ++  N+  V   +  L ++  VL+ W LT+ +  P++  +  S  IA GDL  +   
Sbjct: 179 AATSVYENALIVTQGVMFLTVLLTVLLAWRLTKSLAVPISQALHSSETIAAGDLRPSAIN 238

Query: 239 SSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQ 298
              G DE   L  + E+M+ NL Q + ++  A  QL+SA EEM+ +   S   +  Q  +
Sbjct: 239 RE-GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSE 297

Query: 299 ITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEA 358
           I   ATA+ +M  AV +VARN   ++ ++ A++  ++EG  E    V+SI ++   +G A
Sbjct: 298 IEMAATAVTEMSQAVDEVARNAVTTSVESRASSVSAREGQEELNQTVKSILELTRNVGTA 357

Query: 359 GQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLA 418
                 L  ++  I  V+DVIR++++QTNLLALNAAIEAARAG++GRGFAVVADEVR LA
Sbjct: 358 SVEAQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALA 417

Query: 419 GRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIA 478
            RT +ST EI T++  +Q   K    A E S     +  +Q   + +++ SI  S+  I 
Sbjct: 418 HRTSESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVID 477

Query: 479 DVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLR 538
           +  T IASA  EQ  VA E+ RN+  I   S + A  + QT  A + L +LA  L  TL 
Sbjct: 478 ERNTVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLG 537

Query: 539 RFKI 542
           +FK+
Sbjct: 538 QFKL 541