Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  244 bits (623), Expect = 6e-69
 Identities = 184/547 (33%), Positives = 278/547 (50%), Gaps = 15/547 (2%)

Query: 3   LKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKM 62
           +   S  KK+ A+F V A+I+L      +  ++++   L     + L ++ N +     +
Sbjct: 4   INRTSFAKKLMAAFIVCAMITLAVGGLGMLGINRLSDALELTFSNNLVSVANTNETMTAL 63

Query: 63  SYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMGNW 122
           +   R  + +L  KD+A   +  +  N            Y  T    +E     +     
Sbjct: 64  TTHNRGLYRLLDAKDKATAEKMRQSINGELERAQKVYAIYRATPLEDDERAAGDQYDALM 123

Query: 123 NAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNKVQILS 182
            AY + +            +DA   L N+L+     E +F    G L   +DSNK QI  
Sbjct: 124 PAYMSASQNIFDLQQAGKLEDARNRL-NALA-----EGEFNKARGYLQIMIDSNKRQIKE 177

Query: 183 SVKT---LNSTSV----ASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQT 235
             +    L STSV    A  +    + +++  L+TR+I  PL   ++ +  IA GDL+Q+
Sbjct: 178 GAEAADRLQSTSVFMLTAGIVIAFVVAIMLGILITRMITRPLRSAIEVAQRIASGDLTQS 237

Query: 236 MDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQ 295
           +  SS   DE G L NA   MQ NL++ I EI SA  QL+SA EE+  ++ +S  G+  Q
Sbjct: 238 V--SSTRGDEAGHLLNAIGTMQGNLKRTIQEISSASDQLASAAEELGAVTEESTRGLTRQ 295

Query: 296 QYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADII 355
             +I Q ATA+ +M AAV +VARN   ++ ++ +    +  G  +  + V+ I  +   I
Sbjct: 296 NDEIQQAATAVNEMTAAVEEVARNAVSTSEESKSLATDAANGRGQVDNTVKGIGTMVSEI 355

Query: 356 GEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVR 415
            E+  +V+ L      I+ V++VIRSIA+QTNLLALNAAIEAARAGE GRGFAVVADEVR
Sbjct: 356 TESTGSVTTLAGHVRDISKVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 415

Query: 416 TLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIA 475
            LA RTQ ST EI  +I  +Q  A  A  A  +S ++     E    + S +  I   + 
Sbjct: 416 ALAHRTQASTVEIEGMIGTVQSGADGAVAAMSKSLATATNTQELAQRAGSALEKITSGVG 475

Query: 476 NIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQD 535
            I +    IASA  EQ  VA E+ RN+ NI   S + A G+ QT+ + +EL++LA S   
Sbjct: 476 MINERNMVIASASEEQAQVAREVDRNLVNIQELSAQSAAGANQTSASSQELSRLATSFNT 535

Query: 536 TLRRFKI 542
            + +FK+
Sbjct: 536 MVAQFKL 542