Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  238 bits (608), Expect = 3e-67
 Identities = 179/553 (32%), Positives = 278/553 (50%), Gaps = 27/553 (4%)

Query: 5   NLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKMSY 64
           N  +  K+  SF++ A+ +LG  +     +  + S L N   ++L ++     +   +  
Sbjct: 6   NARLSAKLFMSFALCALFTLGVGVIGSRGISALSSSLDNVFTNSLLSVTKSGEVTASVIA 65

Query: 65  WRRTQFAVL-------PMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKR 117
             R  + +L       P   +  I  ++  N + QAE   S   Y  T    +E     +
Sbjct: 66  QNRDLYRLLAAMAGNAPQSVKDDILASMSAN-KTQAE--KSYATYRATPLDDDERAAGDQ 122

Query: 118 LMGNWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNK 177
           +  +W  Y A+ +Q     L+     A  I+   +       S +  ++  L   ++SN 
Sbjct: 123 MDRDWPGYQALIEQAKSVALSGDIAGARAIIDGDV------RSGYLKVMDQLTTIVNSNN 176

Query: 178 VQI----LSSVKTLNSTS----VASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAK 229
            Q     ++S +T NS      +   ++  A  V M   ++R I  P+   +  +  IA 
Sbjct: 177 RQAGEAAVASDQTQNSAQRNLYIGIGLSFFAAFV-MGLFISRAISTPINTAVTNARRIAS 235

Query: 230 GDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSA 289
           GDL  T+  +S  +DE G +  A   MQ NL+  I +I SA  QL+SA EE+  ++ +S+
Sbjct: 236 GDL--TLPIASQYHDEAGMMLVALSDMQDNLKSTIGQISSAADQLASAAEELNAVTEESS 293

Query: 290 DGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQ 349
            G+  Q  +I Q A+A+ +M AAV +VARN   ++  +   +  +  G  +    V +I 
Sbjct: 294 RGLIRQNDEIQQAASAVNEMTAAVEEVARNAMSTSEASRQTSTDAAAGRDQARDAVNAIN 353

Query: 350 QVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAV 409
            V+  I  +   V EL  +  +I  V+DVIR IA+QTNLLALNAAIEAARAGE GRGFAV
Sbjct: 354 TVSAEISSSTTMVEELAGRVREIGQVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 413

Query: 410 VADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMIS 469
           VADEVR LA RTQ STGEI T+I  +Q  A QA  A   SR+           +   +  
Sbjct: 414 VADEVRALAARTQASTGEIETMIGSVQASADQAVRAMANSRTLTSNTQTLAQATGQSLER 473

Query: 470 IEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQL 529
           I +S+A I D    IA+A  EQ  VA E+ RN+ NI   S + A G+ QT+ + +EL++L
Sbjct: 474 IAQSVAEINDRNMLIATASEEQSHVAREVDRNLVNIQDLSAQTAAGAHQTSASSQELSRL 533

Query: 530 AVSLQDTLRRFKI 542
           A+S  + + +FK+
Sbjct: 534 AISFNNLVGKFKV 546