Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (571), Expect = 7e-63
 Identities = 161/543 (29%), Positives = 278/543 (51%), Gaps = 10/543 (1%)

Query: 3   LKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKM 62
           L+   I  ++   F++ +++ +   ++ + ++  I+++        LP++   DAI   +
Sbjct: 19  LRRFKITLRLVICFAITSLLMVALGVFCLLQMQAIRTQGEAVESGALPSIATADAIAIGL 78

Query: 63  SYWRRTQFAVLPMKDE--AQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120
              R     ++   D+  A I   I    +++ E+      Y   V  G E  +   L  
Sbjct: 79  VKLRSETTRLIANADDPGAVINSKINVE-QLRNEVEKGFSEYLARVQSGTEHDSIVALQD 137

Query: 121 NWNAYT-AVTDQFNQTLLTQGADDAYPILANSLSTFEA--LESDFTLLIGILHQAMDSNK 177
            + A+   + DQ    L+ Q   D    LAN++ + +   ++    LL  +  Q+  +  
Sbjct: 138 AYKAFMPGLQDQI--ALIEQNKLDEARTLANTVLSLQGDLMDMQVQLLRELNTQSAAAAV 195

Query: 178 VQILSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMD 237
               +S +     ++++   +L + +L+ W L+  I  P+   +  ++ IA GDLS+   
Sbjct: 196 EAAGASYEQTRIIALSAIGLVLVLTLLLAWRLSVSIIHPVRQALHIASTIADGDLSEHPI 255

Query: 238 RSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQY 297
               G DE   L     +M+ NL   ID+I +A TQLS +V+EM  I+  SA  ++ Q  
Sbjct: 256 PD--GKDETAQLLITLGRMRTNLHSTIDQIYAAATQLSQSVQEMGSIAEASALNLQLQNT 313

Query: 298 QITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGE 357
           +I Q A A+ QM  A  +VA N  ++ +++ A+   + +G  + ++ + SI+ + + + +
Sbjct: 314 EIEQAAVAVNQMSQAAIEVAGNASNTVTESEASTRAAAQGQEKLSATILSIKALTENVLD 373

Query: 358 AGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTL 417
           +      L +++  I+ ++DVIR+IA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR+L
Sbjct: 374 SSHQAEGLAERTQSISSILDVIRAIANQTNLLALNAAIEAARAGEAGRGFAVVADEVRSL 433

Query: 418 AGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANI 477
           A RT  ST EI  +I  +Q   +Q   +   + +  +  +EQ   +   +  I +S A I
Sbjct: 434 AQRTSASTAEIEGLISGVQQSTQQTASSLRHTATQANLTMEQAASTGEALQVIIQSTATI 493

Query: 478 ADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTL 537
            D    IASA  +Q  VA E+ RN+ +I   S + A G+QQT  A   L+ LA  L   +
Sbjct: 494 NDRNLLIASAAEQQAQVATEVDRNLSSIRDLSSQTASGAQQTTVASNALSMLATDLNLMV 553

Query: 538 RRF 540
           +RF
Sbjct: 554 QRF 556