Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  204 bits (519), Expect = 9e-57
 Identities = 126/360 (35%), Positives = 203/360 (56%), Gaps = 2/360 (0%)

Query: 183 SVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRSSIG 242
           SV  L   ++ S  AIL I + ++W+L R +  PL  +  Q   + +G+L Q    S   
Sbjct: 307 SVALLKVNTLLSIGAILFITLSLSWVLLRAL-KPLTDLKTQLEGLGRGELDQHWQTSPAD 365

Query: 243 -NDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQ 301
            ++E+  + N+   M  NL+ LI+ + S+VT L +  E+  QI+ Q+ D       Q  Q
Sbjct: 366 THNEVDHIRNSVATMAGNLKTLIESLKSSVTTLGTMAEDARQIAAQNGDEATALMAQTDQ 425

Query: 302 VATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQT 361
           +ATA+ +M  ++ DVA ++ D A Q+ + +  ++EG +    MV  + ++++++  +   
Sbjct: 426 IATAIEEMSTSIRDVAEHSSDGAQQSQSVDSAAKEGQKRLDGMVADLGRLSEVLAASHDA 485

Query: 362 VSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRT 421
           V ++ ++S  I+ V +VI SIA+QTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RT
Sbjct: 486 VEQVSKESEAISQVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT 545

Query: 422 QDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVG 481
           Q S  EI+  I  LQ   +      +++      C EQG+ +   + +I   I ++A V 
Sbjct: 546 QSSIQEISKTIGNLQDKVRSTAAQMKKAHELGQSCAEQGSITGEELDTITGRIGDLATVS 605

Query: 482 TQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFK 541
             IASA  +Q +VA++++RN+  I   ++E    +  T  +  +L  LA  L   +  F+
Sbjct: 606 ASIASATQQQSTVAEDITRNLHLISDLAREGEFRAGATVDSANQLRDLARDLTARIGVFR 665