Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  300 bits (769), Expect = 7e-86
 Identities = 188/547 (34%), Positives = 320/547 (58%), Gaps = 11/547 (2%)

Query: 4   KNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKMS 63
           KN+++ +++ + F +++++ LG A + + +L  + S     T++ +P++ +   +   + 
Sbjct: 3   KNMTLAQRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIALL 62

Query: 64  YWRRTQFAVL---PMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEE-EQTFKRLM 119
             RR +  ++      D A I  + +R    ++E       Y K  +  E+ EQ F +L 
Sbjct: 63  DARRNELNMVIDVMTHDSAAIEISKQRFETAKSEFEAGAQQYAKLNFVSEQDEQLFIKLG 122

Query: 120 GNWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNKVQ 179
                Y +       + + QG   +  I+  +L T + LE      + + H+   + +  
Sbjct: 123 EAAEKYFSAHSSL-VSAIDQGDMASANIMIKTL-TRQTLEVAGEETMNLRHENDRAAQEM 180

Query: 180 ILSS---VKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTM 236
           +L S    KT    S+    + +  +V+M +LL R I  P+  ++KQ++ ++ G+L+  +
Sbjct: 181 VLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTNKL 240

Query: 237 DRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQ 296
           + ++   DE G LA +  +MQ NL  L+ E+ +++ QLSSA EE++ ++  S++ M+ QQ
Sbjct: 241 NMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQ 300

Query: 297 YQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARE-NASMVRSIQQVADII 355
            ++ Q+ATAM +M+A V DVARNT D+A+ A  A+  + +G+   N S+VR I +VA  I
Sbjct: 301 NELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVR-IDKVAGAI 359

Query: 356 GEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVR 415
                 + +L   S  I +V++VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR
Sbjct: 360 EATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 419

Query: 416 TLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIA 475
           TLA RTQDST  I +II +LQ+ A +A++  ++S+  + + V +   +   +  I  S++
Sbjct: 420 TLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVS 479

Query: 476 NIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQD 535
            I+ +  QIA+A  EQ +V++EL+RNV NI  AS++VA G++Q A AC +L+ LA  LQD
Sbjct: 480 CISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQD 539

Query: 536 TLRRFKI 542
            +++F I
Sbjct: 540 MVKKFHI 546