Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (588), Expect = 8e-65
 Identities = 143/377 (37%), Positives = 220/377 (58%), Gaps = 4/377 (1%)

Query: 167 GILHQAMD-SNKVQILSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSN 225
           G+L  A+D S+  Q +S ++      +   IA L I   + W + + I  P+A      N
Sbjct: 261 GVLDIALDRSHSEQAMSDIRF--KLIMIGFIAFL-IGTAIAWFIAKSITRPIAETTNALN 317

Query: 226 AIAKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQIS 285
            IA+G+   T        DE+  LA A  +  + +   + ++  + + L+++ EEM+ I+
Sbjct: 318 DIAEGEGDLTRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAIT 377

Query: 286 NQSADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMV 345
           N++    K Q  +  QVATAM +M A V +VA N  D+A  A  A+  ++ G      ++
Sbjct: 378 NETQQMAKRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVI 437

Query: 346 RSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGR 405
            +I  +AD I  A + ++ELE+ ++QI+ V+ VIR+IADQTNLLALNAAIEAARAGE GR
Sbjct: 438 STISLLADEIAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGR 497

Query: 406 GFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQS 465
           GFAVVADEVRTLA RTQ ST EI  +IE LQ  AK        S ++   CV   + +  
Sbjct: 498 GFAVVADEVRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGE 557

Query: 466 LMISIEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRE 525
            + +I ++++ I+ +  QIASA +EQ +V+ E+++NV NI+  +    + + QTA+A  E
Sbjct: 558 ALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDE 617

Query: 526 LTQLAVSLQDTLRRFKI 542
           L QL++ L   L +F+I
Sbjct: 618 LAQLSMRLTTLLAQFRI 634