Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  227 bits (579), Expect = 1e-63
 Identities = 142/420 (33%), Positives = 243/420 (57%), Gaps = 16/420 (3%)

Query: 137 LTQGADDAYPILANSLSTFEALESDFTLL---IGILHQAMD--SNKVQILS---SVKTLN 188
           L +G+D      AN L+  +A  +   ++   + ++ + M+  S+ ++ ++   S  T+ 
Sbjct: 256 LLEGSDSMVQQKANQLNHAQAASNQLAIIEKDVKVIDRNMEEVSDNIEAVAAQMSQATIT 315

Query: 189 STSVAS--NIAILAIMVLMTWLLTRLICGPLAIVMKQSN----AIAKGDLSQTMDRSSIG 242
               AS   + ++ I +++  +++  +  PL   + Q N     +A G+L+  +D SS  
Sbjct: 316 QIDAASFRTMIVVLIAIVVAIIISFAVVTPLKRSLNQVNNALNVLASGNLTHKLDDSS-- 373

Query: 243 NDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQV 302
            DE   LA    ++  +LR LI  I+    QL++A E+ + I+ Q+  G++EQ+ Q+ QV
Sbjct: 374 QDEFAELAKNCNRLVDSLRGLIAGILDRSNQLAAAAEQTSAITAQTTTGIQEQKSQVDQV 433

Query: 303 ATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTV 362
           ATA  ++ ++   V+ +  D+ +Q   A+ +++           +I  +A+ + +AGQ +
Sbjct: 434 ATATTELSSSAQQVSMSANDALAQIKQADQEAKHMRAIAEENKHTILALAEEVAKAGQVI 493

Query: 363 SELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQ 422
           +++   S+ I  ++DVIR IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ
Sbjct: 494 NKVHSDSAAIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 553

Query: 423 DSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGT 482
            ST EI  +IE LQ  A+QA  A +  R+  + CV++   +   + +I +S+    D GT
Sbjct: 554 VSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVQKTEQANLALETISQSVHKAYDAGT 613

Query: 483 QIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542
            IA A  EQ+ V+ ++S  +E+I   S+E A G+ QTAQ+  ++ +LA  LQ ++  F++
Sbjct: 614 HIAHAAQEQNLVSQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASVGEFRV 673