Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (563), Expect = 6e-62
 Identities = 157/548 (28%), Positives = 280/548 (51%), Gaps = 15/548 (2%)

Query: 3   LKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKDKM 62
           ++NL I   +  +F++  +  LG A+  IS++  I  +    + + LP++  ++ +  + 
Sbjct: 1   MRNLKIIHLLLGAFAIPIIAILGLAMLAISKMQVINEQSTVISSNWLPSVRVIERLNGQT 60

Query: 63  SYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMGNW 122
           +  R  +   +   D  Q+R+T     +++ +I+DS  +Y + V   EE+  F      +
Sbjct: 61  ADLRVLESRHILSLDNDQMRETERELEKIKLKIDDSARSYQQLVSSNEEQLIFNNFNKLY 120

Query: 123 NAYTAVTDQFNQTLLTQGADDAYPIL-ANSLSTFEALESDFTLLIGILHQAMDSNKVQIL 181
             Y +   +          +DA  +L   SL T+    SD  L +  ++    +   Q  
Sbjct: 121 KEYLSTQQKILILSRENKNEDAKQLLLTESLKTYNEY-SDLLLQLSDIN----TKGAQAA 175

Query: 182 SSV-KTLNSTSVASNIAILAIMVLMTW----LLTRLICGPLAIVMKQSNAIAKGDLSQTM 236
           S+    +   S+   IAIL I+ L+      ++++ I   +  V      +A GDL+  +
Sbjct: 176 SNYGDEIYDESIKMTIAILVIVSLLVLTTSIVISKFIITSIKTVQHFIAKLANGDLTDRI 235

Query: 237 DRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQ 296
             + IGN+ELG LA         + ++ +++I+     +++ E +    NQ  +  K+  
Sbjct: 236 --TDIGNNELGFLAQDCNHTADKISEMTEQLITVANNTATSAEVLASTMNQVENNSKQML 293

Query: 297 YQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIG 356
            Q+ Q+ATA+ +M +   +V+RN  ++ + A  A     EG +          ++   I 
Sbjct: 294 VQVEQIATALNEMSSTALEVSRNATEAETSASEAMENVTEGNKSLGESNNISVKIGTAIR 353

Query: 357 EAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRT 416
           ++G  V++L+  S +I  V+DVI SI++QTNLLALNAAIEAARAGE+GRGFAVVADEVR+
Sbjct: 354 DSGTIVNQLKDFSIEIGSVIDVITSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRS 413

Query: 417 LAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIAN 476
           LA +TQ ST +I  II KLQ  A++A    + + S +D+        ++    I  S+  
Sbjct: 414 LAAKTQQSTVDIQGIISKLQSQAEKADHYMKANASLLDESQIISEKVRNAFDGISASVNA 473

Query: 477 IADVGTQIASACSEQDSVADELSRNVEN-IHLASQEVAQGSQQTAQACRELTQLAVSLQD 535
           I++V T +A+A SEQ SV +++S+N+ + + +  Q V  G    ++AC ++   A   + 
Sbjct: 474 ISNVNTVVATASSEQSSVTEDISKNISSTVEMVDQNV-MGVGNASKACHDVLTEAGKQKQ 532

Query: 536 TLRRFKIR 543
            L  FK +
Sbjct: 533 LLAFFKTK 540