Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  230 bits (587), Expect = 1e-64
 Identities = 144/420 (34%), Positives = 245/420 (58%), Gaps = 16/420 (3%)

Query: 137 LTQGADDAYPILANSLSTFEALESDFTLL---IGILHQAMD--SNKVQILS---SVKTLN 188
           L +G D    + A  L+  ++  +    +   + ++ + M+  SN ++ ++   S +T+ 
Sbjct: 256 LLEGPDSMVLLKATQLNHAKSAMNQLATIEKDVKVIDRNMEDVSNNIESVAANMSQETIA 315

Query: 189 STSVAS--NIAILAIMVLMTWLLTRLICGPLAIVMKQSN----AIAKGDLSQTMDRSSIG 242
               AS   I ++ I ++   +++  +  PL   + Q N     +A G+L+  +D S  G
Sbjct: 316 KIDAASIRTIIVVLIAIVAAVIISFAVVAPLKRSLYQVNNALNVLASGNLTHKLDDS--G 373

Query: 243 NDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQV 302
           +DE   LA    ++  +LR LI  I+    QL++A E+ + I+ Q+  G++EQ+ Q+ QV
Sbjct: 374 HDEFAELAKNCNRLVDSLRGLIVGILDRSNQLAAAAEQTSAITAQTTSGIQEQKSQVDQV 433

Query: 303 ATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTV 362
           ATA  ++ ++   V+ + +D+ +Q   A+ +++          R+I  +AD + +AGQ +
Sbjct: 434 ATATTELSSSAQQVSMSADDALAQIKQADQEAKHMRTIAEENKRTILALADEVAKAGQVI 493

Query: 363 SELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQ 422
           ++++  S+ I  ++DVIR IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ
Sbjct: 494 NKVQSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQ 553

Query: 423 DSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGT 482
            ST EI  +IE LQ  A+QA  A +  R+  + CV++   +   + +I +S+    D GT
Sbjct: 554 VSTREIQQMIEVLQQGAQQAVAAMDMGRAQANACVDKTEQANLALETISQSVHKAYDAGT 613

Query: 483 QIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542
            IA A  EQ+ V+ ++S  +E+I   S+E A G+ QTAQ+  ++ +LA  LQ ++  F++
Sbjct: 614 HIAHAAQEQNVVSQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKLAEELQASVGEFRV 673