Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 663 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  218 bits (556), Expect = 4e-61
 Identities = 148/445 (33%), Positives = 229/445 (51%), Gaps = 33/445 (7%)

Query: 84  SLLNNLPDAVLAINLKGAVDMANHAAAALFNREESSMIGQQISALMPVFNFTRWLEGSKS 143
           ++L  L + ++ ++ +G +   NH A  LF R    ++G    +L             +S
Sbjct: 229 TVLEVLNEGLVVLDEQGRIKALNHYARQLF-RVGRDLLGSPFKSL------------GQS 275

Query: 144 RLREDVVLDGLDYVMEIMPVYISSDAKQSTLASAMMMLRAA--------NAGLTSTTQ-- 193
            L + V+L G D V ++   +   D        ++  L           N  +   T+  
Sbjct: 276 ELTDAVLLAGGDGVRDLDCTFELPDRSHLACLVSVCPLEQGGRIVSLRENRRIREITRRI 335

Query: 194 IPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRS 253
           I  Q++  FE  +G S   +  +  A+  +  D   LI GE+GTGKE+ A+A HN SDR 
Sbjct: 336 IGTQASYTFETILGRSQAIEDALHLARVASRSDSTTLILGESGTGKELFAQAIHNASDRC 395

Query: 254 SAPFLVLSCASMPDDVAETELFGHAPGSFNH--QQGHKGIFEQANGGTVFLDEIGEMSPH 311
             PF+ ++C ++P ++ ++ELFGH  G+F    + G  G FE A+GGT+FLDEIG+MS  
Sbjct: 396 GGPFVAVNCGAIPRELVQSELFGHVEGAFTGAARGGSAGKFELADGGTIFLDEIGDMSFD 455

Query: 312 LQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLR 371
            Q+ LLR LQ+G   RVG +  + V+VR+IA+T  NL+       FREDL+YRLNVL L 
Sbjct: 456 AQVSLLRVLQEGEVTRVGAKKSLRVNVRIIAATHRNLSQAVAEGAFREDLYYRLNVLNLT 515

Query: 372 IPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQYQWPGNMRQLDNMVLR- 430
           +PPLR R  DV  L   F+ +    L      L+   LD L  Y WPGN+R+L+N++ R 
Sbjct: 516 VPPLRMRREDVPLLARHFLARCARSLRKSMQDLSPAALDMLGAYHWPGNVRELENVIERA 575

Query: 431 ---ALTE-IEGDVLGIEPFHLPQVDSVSSAPSINLDGSLDDIMKEYESQVLDRLFQSFPS 486
              A+TE IE   L +E     +  +  SAP   +     D+     + ++  L  +  +
Sbjct: 576 TNLAMTELIEPSDLALEIRQRGRPSTWGSAPGPRM---APDLGTHEMNAIIAALKDTRGN 632

Query: 487 SRKLAKRLNVSHTSIANKLRDYGIR 511
            R  A+RLNVS   + NK+  +G++
Sbjct: 633 IRLAAQRLNVSRGGLYNKMSRFGLK 657