Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N1B4

 Score =  206 bits (524), Expect = 2e-57
 Identities = 125/327 (38%), Positives = 185/327 (56%), Gaps = 16/327 (4%)

Query: 194 IPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRS 253
           I  Q++  FE   G S   +  +   K  +  D   LI GE+GTGKE+ A+A HN S+R 
Sbjct: 342 IGTQASYTFETIQGSSRAIQDALHLGKIASRSDSTTLILGESGTGKELFAQAIHNASERC 401

Query: 254 SAPFLVLSCASMPDDVAETELFGHAPGSF--NHQQGHKGIFEQANGGTVFLDEIGEMSPH 311
           + PF+ ++C ++P D+ ++ELFGH  G+F  + + G  G FE A+GGT+FLDEIG+MS  
Sbjct: 402 NGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFD 461

Query: 312 LQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLR 371
            Q+ LLR LQ+G   RVG +    VDVR+IA+T  NL+       FREDL+YRLNVL L 
Sbjct: 462 AQVSLLRVLQEGEVTRVGAKKSQQVDVRIIAATHRNLSQAVADGAFREDLYYRLNVLNLT 521

Query: 372 IPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQYQWPGNMRQLDNMVLR- 430
           +PPLR R  DV  L   F+ +    L      ++ + LD LS Y WPGN+R+L+N + R 
Sbjct: 522 VPPLRMRREDVPLLARHFLNRCARSLRKSVQGISPEALDILSAYSWPGNVRELENTIERA 581

Query: 431 ---ALTEIEGDVLGIEPFHLP-QVDSVSSAP---SINLDGSLDDIMKEYESQVLDRLFQS 483
              A+TE+      I+P  LP ++      P   S+    +  D+     + ++  L  +
Sbjct: 582 TNLAVTEL------IQPADLPLEIKQRLRQPVPGSVPEPLAALDLGTHEMNAIIAALKDT 635

Query: 484 FPSSRKLAKRLNVSHTSIANKLRDYGI 510
             + R  A++LNVS   + NK+  +G+
Sbjct: 636 RGNIRLAARQLNVSRGGLYNKMNRFGL 662