Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  204 bits (518), Expect = 7e-57
 Identities = 125/309 (40%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 206 VGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRSSAPFLVLSCASM 265
           VG S   + +  + ++++  D  +LI GE+GTGKE+ A+A +  S RS  PF+ ++C ++
Sbjct: 147 VGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARALYQLSARSHKPFVAINCGAI 206

Query: 266 PDDVAETELFGHAPGSFNHQQGHK-GIFEQANGGTVFLDEIGEMSPHLQIKLLRFLQDGT 324
           P+ +AE ELFG   G++      K G  E A+GGTVFLDEIGE+    Q KLLRFLQ+G 
Sbjct: 207 PESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDEIGELPLLQQTKLLRFLQEGV 266

Query: 325 FRRVGEEHEIHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLRIPPLRERPSDVQP 384
             R+G+  EI +DVRVIA+T  +L       RFREDL+YRLNV+ + +P LRERP D+  
Sbjct: 267 ISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYRLNVVPIHMPALRERPEDIGR 326

Query: 385 LLELFITKHCNKLGMLKPKLTDDLLDKLSQYQWPGNMRQLDNMVLRAL----TEIEGDVL 440
           L+E F+  H N+ GM  PKL+ D L  L  + WPGN+R+L N + R +     E     L
Sbjct: 327 LVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRELANRIERFVLLGDEEEMVQEL 386

Query: 441 GIEPFHLPQVDSVSSAPSINLDGSLDDIMKEYESQVLDRLFQSFPSSR-KLAKRLNVSHT 499
           G  P  L     V     I  +    D ++    Q LDR    F  +R K AK L +S+ 
Sbjct: 387 GAAPQPLDTKRFVLPEAGIEWESFEKDCLR----QALDR----FEGNRTKAAKCLGLSYK 438

Query: 500 SIANKLRDY 508
           +   +L  Y
Sbjct: 439 AFLYRLEKY 447