Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  200 bits (508), Expect = 1e-55
 Identities = 115/316 (36%), Positives = 184/316 (58%), Gaps = 10/316 (3%)

Query: 206 VGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRSSAPFLVLSCASM 265
           V    R  +L++ A+K+A  D  ++I G +G+GKE+LA+  H  S R++ PF+ ++CA++
Sbjct: 129 VVADERSLALLALAQKVAQSDASVMIMGPSGSGKEVLARYIHQHSQRANEPFVAINCAAI 188

Query: 266 PDDVAETELFGHAPGSFNHQ-QGHKGIFEQANGGTVFLDEIGEMSPHLQIKLLRFLQDGT 324
           P+++ E  LFG+  G+F    Q   G FEQA GGT+ LDEI EM   LQ KLLR LQ+  
Sbjct: 189 PENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAKLLRVLQERE 248

Query: 325 FRRVGEEHEIHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLRIPPLRERPSDVQP 384
             R+G    I +DVRV+A++  +L  +A    FREDL+YR+NV  L  P L +RP+D+ P
Sbjct: 249 VERLGGRKTIKLDVRVLATSNRDLKAMATKGDFREDLYYRINVFPLTWPALHQRPADILP 308

Query: 385 LLELFITKHCNKLGM-LKPKLTDDLLDKLSQYQWPGNMRQLDNMVLRALTEIEGDVLGIE 443
           L    + +H    G+ + P L D    +L  ++WPGN+R+LDN+V RAL    GD +  +
Sbjct: 309 LARHLVLRHAKAAGLAVAPSLDDQASRRLLGHRWPGNVRELDNVVQRALILQTGDTICAK 368

Query: 444 PFHLPQVD-----SVSSAPSINLDGSLDDIMKEYESQVLDRLFQSFPSSRKLAKRLNVSH 498
              +   D     +  S  ++  +G  D++  +    +L+ L Q   S +++A++L +S 
Sbjct: 369 DIVIDTQDVMLEPAFDSEKTVEPEGLGDELKAQEHVIILETLNQCNGSRKQVAEKLGISA 428

Query: 499 TSIANK---LRDYGIR 511
            ++  K   +RD GI+
Sbjct: 429 RTLRYKMARMRDMGIQ 444