Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  206 bits (525), Expect = 1e-57
 Identities = 115/288 (39%), Positives = 168/288 (58%), Gaps = 5/288 (1%)

Query: 164 YISSDAKQSTLASAMMM-LRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKL 222
           YI+  A  S++  A++  L   N  L  T Q   Q N      VG S      +    K 
Sbjct: 99  YITKGAPVSSIRLAILRALEFRNEKLARTAQQGRQFNPA--GLVGTSPAFMECLDLVAKA 156

Query: 223 AMLDQPLLIEGETGTGKEMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSF 282
           A  D P+LI GETGTGKE+ A+A H  SDR+  PF+V+ CA++P+++ E+ LFGH  G+F
Sbjct: 157 AHSDVPVLITGETGTGKELAARAIHENSDRAGRPFVVVDCAALPENLTESVLFGHVRGAF 216

Query: 283 NH-QQGHKGIFEQANGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVI 341
               +  +G+  QA+GGT+FLDEIGE+SP LQ   LR LQ+  FR VG   E+  D R++
Sbjct: 217 TGADRDAEGLIRQASGGTLFLDEIGELSPTLQKTFLRVLQERRFRPVGGRQEVECDFRLL 276

Query: 342 ASTRHNLADLAESRRFREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLK 401
           A+T  +L+ +     FREDL YR+  + + +PPLR+R  D++PL E F+ ++C +  +  
Sbjct: 277 AATNRDLSLMVRRGEFREDLLYRVRSMHIALPPLRQREDDLRPLSEHFVHQYCERNNLPS 336

Query: 402 PKLTDDLLDKLSQYQWPGNMRQLDNMVLRALTEIEGDVLGIEPFHLPQ 449
             LT +LL  L  + WPGN+R+L N  +  +    G V  + P HLP+
Sbjct: 337 RILTQELLRALVAHHWPGNVRELRN-TMETMIAFAGGVRTLYPVHLPE 383