Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  231 bits (588), Expect = 7e-65
 Identities = 162/509 (31%), Positives = 256/509 (50%), Gaps = 59/509 (11%)

Query: 54  LMAEIRRIPGVKDVRKIQFMPIERHNTELISLLNNLPDAVLAINLKGAVDMANHAAAALF 113
           L   + RIP + + R +  +P E      + LL+NL D VL+I+ +G V   N  A   +
Sbjct: 102 LFETLGRIPDLLEFRIVDTLPAEERANRFLVLLDNLRDGVLSIDAEGRVTSINKVAREAY 161

Query: 114 N----------------REESSMIGQQISAL-MPVFNFTRWLEGSKS-RLREDVVLDG-- 153
                               + + G  + AL +P       L G +    + +V   G  
Sbjct: 162 GCTGAPGVSGTSGTPGGTPAADLSGLPLDALGLPDRGILDCLSGRELVDAKREVATPGGG 221

Query: 154 -LDYVMEIMPVYISSDAKQSTLASA--MMMLRAANAGLTSTTQIPLQSNLGFEHFVGVSN 210
            L + +   P+          +  A  M  +R     +T   Q+     +G    +G + 
Sbjct: 222 RLQFFVTRRPIRDGEGRIIGAVEVARDMREIRKLARSITEPAQVTFGDIVGQHPAIGFA- 280

Query: 211 RHKSLMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRSSAPFLVLSCASMPDDVA 270
                +S A+++A  D  + I GE+GTGKE+ A+A H  S R   PF+ ++CA++P+ + 
Sbjct: 281 -----ISFARRVAATDSIIAIRGESGTGKELFARAIHTASGRQG-PFVPVNCAALPEQLL 334

Query: 271 ETELFGHAPGSFN--HQQGHKGIFEQANGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRV 328
           E+ELFG+  G+F    + G  G+FE A GGTV LDEIG+M    Q K+LR +Q+G+ RRV
Sbjct: 335 ESELFGYEAGAFTGGRRDGKPGLFETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRV 394

Query: 329 GEEHEIHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLRIPPLRERPSDVQPLLEL 388
           G   E+ VDVR+I +T   L  L E  RFR+DL+YR+NVL + IPPL+ERP D+  L E 
Sbjct: 395 GGTAEVPVDVRIITATNRTLERLVEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEH 454

Query: 389 FITKHCNKLGMLKPKLTDDLLDKLSQYQWPGNMRQLDNMVLRALT--------------- 433
           F+     +LG     L+   L +L+ + WPGN+R+L N+V RA                 
Sbjct: 455 FLLGLAARLGGPVRSLSPGALARLAGHHWPGNVRELKNVVERAAILCPDDVVGARFILFA 514

Query: 434 -EIEGDVLGIEPFHLPQ--VDSVSSAPSI--------NLDGSLDDIMKEYESQVLDRLFQ 482
            E+EG + G E   L     D+V+ A ++        + +G L D++  +E +++     
Sbjct: 515 HELEGGLFG-ESARLADGVADTVADAAALASGHEHHGDGEGRLKDMIAVFEKRIIVDAVA 573

Query: 483 SFPSSRKLAKRLNVSHTSIANKLRDYGIR 511
           +  S RK A++L +SHT++ +KLR +G+R
Sbjct: 574 AAGSVRKAARKLGISHTALLDKLRRHGLR 602