Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., transcriptional regulatory protein TyrR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  401 bits (1030), Expect = e-116
 Identities = 214/517 (41%), Positives = 324/517 (62%), Gaps = 12/517 (2%)

Query: 1   MRLEVLCEDRLGLTRELLDILASKSIDLRGIEIDVIGIIYLNCPDIDFETFSELMAEIRR 60
           MRLEV C+DR+GL +++L +L    I+L  I+    G +YL   ++ FET S LM +IR+
Sbjct: 1   MRLEVSCQDRVGLAKDILVVLERYGINLIAIDASNQGFLYLQFAEVSFETLSALMPQIRK 60

Query: 61  IPGVKDVRKIQFMPIERHNTELISLLNNLPDAVLAINLKGAVDMANHAAAALFNREESSM 120
           +  V DVR + FMP E+ +  L +LL  LPD+V +I++K  + + N +A       E  +
Sbjct: 61  VESVHDVRTVSFMPSEQEHYALKTLLKTLPDSVFSIDVKARIRIVNESALLNMGMGEHEV 120

Query: 121 IGQQISALMPVFNFTRWL-EGSKSRLREDVVLDGLDYVMEIMPVYISSDAKQSTLASAMM 179
           + + ++  +  FNF+RWL EG        V +   +Y+ E++P+Y+  + +++ L  A++
Sbjct: 121 LDESLNHWVQGFNFSRWLSEGQVLPQAARVNIGQNEYLAEMLPIYLPDEDEKTILVGAVV 180

Query: 180 MLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGK 239
            L++  A +            GFE+ +  S++ K ++ QA+++A LD PLLI GETGTGK
Sbjct: 181 SLKSP-ARVGKQFNALQNQTTGFENVLASSDKMKEVLKQARRMAQLDAPLLITGETGTGK 239

Query: 240 EMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFNHQQGH---KGIFEQAN 296
           E++A+A H+ S R   PF+ ++CA++PD  AE ELFG+        QG    +G FE+A 
Sbjct: 240 ELMARASHDASMRREKPFIAINCAALPDSAAEEELFGYV------SQGKVIKRGFFEEAK 293

Query: 297 GGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESRR 356
           GGTVFLDE+ EMS   Q+KLLR LQDGTFRR+G + E+  DVR+I ST+ NLA+L ++  
Sbjct: 294 GGTVFLDEVAEMSKAAQVKLLRLLQDGTFRRIGGDEEVRADVRIICSTQKNLAELCQTGE 353

Query: 357 FREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQYQ 416
           FREDL+YR++VL+  IP LRER  D+ PL E+F+  +  +L     +++    D L  Y 
Sbjct: 354 FREDLYYRIHVLSYHIPSLRERKVDIIPLTEMFLEHYSQQLSSPVRRISAQCRDHLLTYA 413

Query: 417 WPGNMRQLDNMVLRALTEIEGD-VLGIEPFHLPQVDSVSSAPSINLDGSLDDIMKEYESQ 475
           WPGN+RQL N V RA++  +G   L +E   LP             +G+LDD MK++E+ 
Sbjct: 414 WPGNVRQLKNAVFRAVSMWDGSGELTVEQLKLPSYAEGFGYFDNAFEGNLDDAMKQFEAS 473

Query: 476 VLDRLFQSFPSSRKLAKRLNVSHTSIANKLRDYGIRK 512
           +L RL+ ++PS+R+LAK+L VSHT+IANKLR+Y I K
Sbjct: 474 LLRRLYPAYPSTRQLAKKLGVSHTAIANKLREYKIAK 510